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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26001-26050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0973 | 97.0711 | 99.1453 | 74.0433 | 464 | 14 | 464 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5161 | 92.6267 | 98.5915 | 44.5312 | 201 | 16 | 210 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.6318 | 98.2079 | 99.0593 | 84.2255 | 1370 | 25 | 1369 | 13 | 3 | 23.0769 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.0741 | 99.0741 | 99.0741 | 82.5186 | 535 | 5 | 535 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.7374 | 90.2174 | 95.4023 | 68.7050 | 83 | 9 | 83 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.0220 | 94.6281 | 97.4576 | 65.7475 | 229 | 13 | 230 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7213 | 96.7213 | 96.7213 | 67.4667 | 118 | 4 | 118 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3760 | 99.2368 | 99.5156 | 55.1976 | 3901 | 30 | 3903 | 19 | 3 | 15.7895 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4251 | 70.6294 | 96.1165 | 91.5574 | 101 | 42 | 99 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.5193 | 68.6275 | 94.5205 | 91.5704 | 70 | 32 | 69 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8356 | 99.8174 | 99.8539 | 32.2109 | 2733 | 5 | 2734 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7270 | 99.6589 | 99.7951 | 46.6278 | 1461 | 5 | 1461 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5689 | 99.4260 | 99.7122 | 48.3103 | 2425 | 14 | 2425 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6503 | 99.6503 | 99.6503 | 49.2608 | 855 | 3 | 855 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7955 | 99.7728 | 99.8183 | 42.2613 | 2196 | 5 | 2197 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.2491 | 98.6932 | 99.8112 | 85.5873 | 1586 | 21 | 1586 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.3103 | 98.7993 | 99.8267 | 86.8804 | 1728 | 21 | 1728 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.3193 | 98.8149 | 99.8290 | 86.9124 | 1751 | 21 | 1751 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.6549 | 98.5965 | 98.7135 | 57.7151 | 843 | 12 | 844 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4917 | 99.6183 | 99.3655 | 63.7701 | 783 | 3 | 783 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.6780 | 86.2903 | 95.5357 | 87.6243 | 107 | 17 | 107 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.0000 | 87.8049 | 92.3077 | 89.8964 | 36 | 5 | 36 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7712 | 99.7712 | 99.7712 | 36.2974 | 1308 | 3 | 1308 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.6482 | 99.4280 | 99.8694 | 61.5639 | 3824 | 22 | 3824 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | het | 96.6071 | 94.5804 | 98.7226 | 91.3140 | 541 | 31 | 541 | 7 | 3 | 42.8571 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.1379 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3908 | 98.3908 | 98.3908 | 69.9793 | 428 | 7 | 428 | 7 | 3 | 42.8571 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0580 | 91.2409 | 99.2084 | 70.4829 | 375 | 36 | 376 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9899 | 99.4924 | 98.4925 | 60.5941 | 196 | 1 | 196 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5649 | 98.4772 | 90.9516 | 90.5332 | 582 | 9 | 583 | 58 | 3 | 5.1724 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 95.2178 | 98.1855 | 92.4242 | 92.0494 | 487 | 9 | 488 | 40 | 3 | 7.5000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4785 | 99.4206 | 99.5365 | 64.1313 | 858 | 5 | 859 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4310 | 99.4310 | 99.4310 | 47.4196 | 699 | 4 | 699 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0938 | 95.3488 | 96.8504 | 89.2962 | 246 | 12 | 246 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.9847 | 95.0758 | 96.9112 | 89.8431 | 251 | 13 | 251 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 95.9559 | 94.9091 | 97.0260 | 89.6974 | 261 | 14 | 261 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | * | 97.2310 | 96.6601 | 97.8088 | 86.7125 | 492 | 17 | 491 | 11 | 3 | 27.2727 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.8690 | 92.8358 | 99.1071 | 67.4419 | 311 | 24 | 333 | 3 | 3 | 100.0000 | |