PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25701-25750 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | het | 97.5753 | 96.8750 | 98.2857 | 85.5848 | 186 | 6 | 344 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7334 | 99.1228 | 98.3471 | 87.3629 | 113 | 1 | 238 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | * | 97.2973 | 100.0000 | 94.7368 | 96.7942 | 24 | 0 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | het | 96.4637 | 96.6667 | 96.2617 | 94.0884 | 58 | 2 | 103 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 46.3980 | 31.1475 | 90.9091 | 61.1765 | 19 | 42 | 30 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 62.0666 | 45.8824 | 95.8904 | 59.6685 | 39 | 46 | 70 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 17.0474 | 9.3664 | 94.7368 | 65.0307 | 34 | 329 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | * | 80.7128 | 73.3333 | 89.7436 | 84.6457 | 11 | 4 | 35 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 87.0389 | 78.1079 | 98.2759 | 48.3680 | 1288 | 361 | 171 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.0000 | 76.2299 | 98.6425 | 50.7795 | 1472 | 459 | 218 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 63.6016 | 46.9512 | 98.5507 | 57.2314 | 77 | 87 | 204 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 71.4286 | 66.6667 | 76.9231 | 92.0245 | 10 | 5 | 10 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 72.8311 | 60.4167 | 91.6667 | 82.9384 | 29 | 19 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8129 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8605 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | * | 86.0819 | 79.3103 | 94.1176 | 91.1917 | 46 | 12 | 48 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4084 | 97.8691 | 98.9537 | 78.0007 | 643 | 14 | 662 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2259 | 93.4307 | 99.1935 | 71.5379 | 384 | 27 | 369 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5655 | 97.5492 | 99.6032 | 43.6746 | 2229 | 56 | 2510 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1786 | 98.8543 | 99.5050 | 85.3976 | 604 | 7 | 603 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | het | 97.4006 | 97.1609 | 97.6415 | 83.4094 | 1232 | 36 | 1242 | 30 | 3 | 10.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | * | 97.7499 | 97.6664 | 97.8336 | 87.0352 | 1130 | 27 | 1129 | 25 | 3 | 12.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | * | 97.3150 | 97.3788 | 97.2513 | 89.0482 | 743 | 20 | 743 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | * | 97.3667 | 97.4293 | 97.3042 | 89.0328 | 758 | 20 | 758 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 83.1268 | 71.4871 | 99.2941 | 36.3772 | 1221 | 487 | 422 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.4583 | 96.5753 | 96.3415 | 31.6667 | 564 | 20 | 79 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | * | 89.1165 | 82.1705 | 97.3451 | 85.2480 | 212 | 46 | 220 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | * | 89.1561 | 82.1970 | 97.4026 | 85.7934 | 217 | 47 | 225 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | * | 88.0846 | 80.3636 | 97.4468 | 85.8519 | 221 | 54 | 229 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.6078 | 11.6279 | 62.5000 | 75.7576 | 10 | 76 | 5 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0563 | 65.8537 | 90.0000 | 61.0390 | 27 | 14 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 57.2597 | 42.5532 | 87.5000 | 68.4211 | 20 | 27 | 21 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 58.8235 | 44.4444 | 86.9565 | 67.1429 | 20 | 25 | 20 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 61.4334 | 48.6486 | 83.3333 | 60.0000 | 18 | 19 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | * | 54.1375 | 38.3721 | 91.8919 | 72.3881 | 33 | 53 | 34 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.2031 | 95.3757 | 99.1018 | 76.8377 | 330 | 16 | 331 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.3333 | 66.6667 | 72.2222 | 89.6254 | 34 | 17 | 26 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.6292 | 0 | 1 | 0 | 3 | 3 | 100.0000 | ||