PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25201-25250 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | homalt | 99.7098 | 99.5654 | 99.8547 | 73.4497 | 2749 | 12 | 2749 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 42.0561 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.5663 | 92.6829 | 90.4762 | 89.2308 | 38 | 3 | 38 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7811 | 99.6656 | 99.8969 | 59.9463 | 3874 | 13 | 3874 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6549 | 99.4561 | 99.8544 | 38.0748 | 2743 | 15 | 2743 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | * | 96.3245 | 97.4359 | 95.2381 | 98.9802 | 76 | 2 | 140 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | * | 91.9970 | 89.4737 | 94.6667 | 86.9110 | 68 | 8 | 71 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.7692 | 96.2804 | 0 | 0 | 21 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 42.8571 | 90.6667 | 0 | 0 | 3 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.3217 | 96.5283 | 0 | 1 | 112 | 31 | 4 | 12.9032 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.2256 | 0 | 0 | 0 | 13 | 4 | 30.7692 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.3217 | 96.5283 | 0 | 1 | 112 | 31 | 4 | 12.9032 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 89.4737 | 82.0175 | 98.4211 | 51.7154 | 748 | 164 | 748 | 12 | 4 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.5264 | 78.6070 | 86.8571 | 81.0401 | 158 | 43 | 152 | 23 | 4 | 17.3913 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 63.1579 | 54.5455 | 75.0000 | 88.2353 | 6 | 5 | 12 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.9729 | 83.2080 | 97.9351 | 51.7094 | 332 | 67 | 332 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.4914 | 70.8428 | 98.7245 | 40.6959 | 311 | 128 | 387 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.9500 | 88.4615 | 91.4894 | 71.1656 | 46 | 6 | 43 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.7173 | 62.8571 | 98.4190 | 46.7368 | 220 | 130 | 249 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 81.5419 | 72.4638 | 93.2203 | 60.1351 | 50 | 19 | 55 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.9902 | 73.3509 | 98.2394 | 46.3138 | 278 | 101 | 279 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | * | 80.7640 | 68.5979 | 98.1758 | 85.4699 | 592 | 271 | 592 | 11 | 4 | 36.3636 | |
| ckim-isaac | INDEL | D1_5 | map_siren | hetalt | 78.6581 | 67.8571 | 93.5484 | 87.0293 | 57 | 27 | 58 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 78.7936 | 69.0909 | 91.6667 | 70.8738 | 38 | 17 | 55 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.1111 | 85.4167 | 97.6190 | 27.2727 | 164 | 28 | 164 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.7121 | 90.9707 | 98.7745 | 28.0423 | 403 | 40 | 403 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | * | 65.8291 | 50.0000 | 96.3235 | 84.3858 | 132 | 132 | 131 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | * | 65.3788 | 49.4545 | 96.4286 | 84.2697 | 136 | 139 | 135 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.2956 | 51.4563 | 93.1624 | 81.5748 | 106 | 100 | 109 | 8 | 4 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6705 | 61.2500 | 86.3636 | 81.0017 | 98 | 62 | 95 | 15 | 4 | 26.6667 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.0576 | 66.0714 | 89.6000 | 69.0594 | 111 | 57 | 112 | 13 | 4 | 30.7692 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.8810 | 91.7722 | 98.2079 | 71.1479 | 290 | 26 | 274 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.3325 | 89.8592 | 99.2746 | 57.8234 | 957 | 108 | 958 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 85.6175 | 75.6148 | 98.6702 | 63.9501 | 369 | 119 | 371 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 83.7989 | 78.9474 | 89.2857 | 81.8182 | 15 | 4 | 25 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.9548 | 89.6552 | 96.5066 | 51.9916 | 442 | 51 | 442 | 16 | 3 | 18.7500 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.9906 | 90.0000 | 94.0711 | 55.8464 | 243 | 27 | 238 | 15 | 3 | 20.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9122 | 68.7259 | 98.3516 | 52.7273 | 178 | 81 | 179 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.8908 | 43.1818 | 65.0000 | 89.0710 | 19 | 25 | 13 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | * | 35.2996 | 22.9885 | 76.0000 | 91.9094 | 20 | 67 | 19 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | het | 26.6667 | 17.3913 | 57.1429 | 93.5484 | 8 | 38 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | * | 35.8056 | 23.3333 | 76.9231 | 92.6346 | 21 | 69 | 20 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | het | 28.2353 | 18.7500 | 57.1429 | 94.4444 | 9 | 39 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | * | 37.7178 | 24.7423 | 79.3103 | 92.0330 | 24 | 73 | 23 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | het | 29.5567 | 19.6078 | 60.0000 | 94.2085 | 10 | 41 | 9 | 6 | 3 | 50.0000 | |