PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
201-250 / 86044 show all
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50het
69.5027
72.7855
66.5031
38.8732
11471428921148106528272
77.6568
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.1139
37.4782
48.0583
42.5126
771912877771083338271
99.2560
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.2473
96.5460
49.2736
54.6440
8106290814083808238
98.3055
gduggal-snapvardINDEL*HG002complexvarhet
85.1014
90.1233
80.6095
59.0444
41646456451233123248222
66.7154
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.2556
85.1120
46.6359
49.9659
71461250718182178174
99.4767
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
gduggal-snapvardINDELI6_15**
50.7754
45.6827
57.1459
41.2412
113381348113483101118109
80.1998
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
ghariani-varprowlINDELD6_15**
61.5999
58.5275
65.0128
56.9372
15271108211526582158072
98.2593
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
ciseli-customINDEL*HG002complexvar*
81.0665
80.3871
81.7575
57.5412
618451508961574137398055
58.6287
mlin-fermikitSNPti*homalt
99.0118
99.0588
98.9648
15.5441
795481755879550283218052
96.7672
jpowers-varprowlINDELD6_15**
59.8326
55.9329
64.3169
53.9833
14594114981458980948006
98.9128
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
77.1368
72.0532
82.9923
72.5173
1122343534522592687975
86.0488
gduggal-snapvardINDELI6_15*het
64.9859
82.1571
53.7516
42.4853
824217901159199737974
79.9559
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6909
92.5107
78.0901
74.9769
56454573275191897904
86.0159
ciseli-customSNPti**
98.3062
98.8974
97.7221
19.7040
2062524229942057571479637893
16.4564
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
65.0019
66.3696
63.6895
52.5107
13181667919510111237883
70.8712
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
ghariani-varprowlINDELD6_15*het
73.5164
97.8175
58.8869
57.8444
113392531136479347830
98.6892
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
59.8797
85.7519
46.0008
48.3317
71741192716684127803
92.7603
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
70.9040
85.7657
60.4321
53.0525
9526158116837110247799
70.7456
jpowers-varprowlINDELD6_15*het
70.9404
91.9945
57.7285
54.4042
106649281068978277764
99.1951
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.5742
45.9865
56.1787
51.4566
10232120181013879087671
97.0030
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
64.9932
93.6517
49.7646
52.1813
7863533782278967660
97.0111
gduggal-bwavardINDELD6_15**
62.6145
59.4780
66.1003
55.5649
15519105731536778817658
97.1704
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
gduggal-bwavardINDELD6_15*het
73.6436
98.1194
58.9409
57.7838
113742181128678627644
97.2272
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
65.1835
87.6412
51.8876
46.8905
90771280904483867588
90.4841
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
46.9955
42.3432
52.7964
40.4686
872111875866677487585
97.8962
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.3787
92.9984
46.9277
41.3270
6867517684377397577
97.9067
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
ciseli-customINDELI1_5*het
91.4560
94.1106
88.9472
61.0454
7438546557480192957503
80.7208
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.3208
43.7811
51.4831
46.1266
799410265798475247396
98.2988
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8569
39.4929
49.3052
41.4961
721111048720374067360
99.3789
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130