PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
201-250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.5027 | 72.7855 | 66.5031 | 38.8732 | 11471 | 4289 | 21148 | 10652 | 8272 | 77.6568 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 42.1139 | 37.4782 | 48.0583 | 42.5126 | 7719 | 12877 | 7710 | 8333 | 8271 | 99.2560 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.2473 | 96.5460 | 49.2736 | 54.6440 | 8106 | 290 | 8140 | 8380 | 8238 | 98.3055 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | het | 85.1014 | 90.1233 | 80.6095 | 59.0444 | 41646 | 4564 | 51233 | 12324 | 8222 | 66.7154 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 60.2556 | 85.1120 | 46.6359 | 49.9659 | 7146 | 1250 | 7181 | 8217 | 8174 | 99.4767 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.6517 | 96.2893 | 46.4314 | 47.0193 | 7110 | 274 | 7143 | 8241 | 8121 | 98.5439 | |
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| mlin-fermikit | SNP | ti | * | * | 98.9073 | 98.2768 | 99.5460 | 14.9446 | 2049581 | 35937 | 2049572 | 9348 | 8085 | 86.4891 | |
| ghariani-varprowl | INDEL | D6_15 | * | * | 61.5999 | 58.5275 | 65.0128 | 56.9372 | 15271 | 10821 | 15265 | 8215 | 8072 | 98.2593 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 57.1959 | 83.7351 | 43.4309 | 41.9942 | 6183 | 1201 | 6218 | 8099 | 8063 | 99.5555 | |
| ciseli-custom | INDEL | * | HG002complexvar | * | 81.0665 | 80.3871 | 81.7575 | 57.5412 | 61845 | 15089 | 61574 | 13739 | 8055 | 58.6287 | |
| mlin-fermikit | SNP | ti | * | homalt | 99.0118 | 99.0588 | 98.9648 | 15.5441 | 795481 | 7558 | 795502 | 8321 | 8052 | 96.7672 | |
| jpowers-varprowl | INDEL | D6_15 | * | * | 59.8326 | 55.9329 | 64.3169 | 53.9833 | 14594 | 11498 | 14589 | 8094 | 8006 | 98.9128 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 77.1368 | 72.0532 | 82.9923 | 72.5173 | 11223 | 4353 | 45225 | 9268 | 7975 | 86.0488 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |
| anovak-vg | INDEL | * | HG002compoundhet | het | 52.7411 | 50.6595 | 55.0010 | 54.9014 | 2074 | 2020 | 13874 | 11351 | 7959 | 70.1172 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6909 | 92.5107 | 78.0901 | 74.9769 | 5645 | 457 | 32751 | 9189 | 7904 | 86.0159 | |
| ciseli-custom | SNP | ti | * | * | 98.3062 | 98.8974 | 97.7221 | 19.7040 | 2062524 | 22994 | 2057571 | 47963 | 7893 | 16.4564 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 65.0019 | 66.3696 | 63.6895 | 52.5107 | 13181 | 6679 | 19510 | 11123 | 7883 | 70.8712 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 40.1009 | 36.3420 | 44.7271 | 57.2051 | 6422 | 11249 | 6417 | 7930 | 7870 | 99.2434 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 40.1009 | 36.3420 | 44.7271 | 57.2051 | 6422 | 11249 | 6417 | 7930 | 7870 | 99.2434 | |
| ghariani-varprowl | INDEL | D6_15 | * | het | 73.5164 | 97.8175 | 58.8869 | 57.8444 | 11339 | 253 | 11364 | 7934 | 7830 | 98.6892 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 59.8797 | 85.7519 | 46.0008 | 48.3317 | 7174 | 1192 | 7166 | 8412 | 7803 | 92.7603 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.9040 | 85.7657 | 60.4321 | 53.0525 | 9526 | 1581 | 16837 | 11024 | 7799 | 70.7456 | |
| jpowers-varprowl | INDEL | D6_15 | * | het | 70.9404 | 91.9945 | 57.7285 | 54.4042 | 10664 | 928 | 10689 | 7827 | 7764 | 99.1951 | |
| ciseli-custom | SNP | * | HG002complexvar | homalt | 96.2605 | 98.9760 | 93.6900 | 21.2638 | 285620 | 2955 | 278961 | 18788 | 7728 | 41.1326 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.5742 | 45.9865 | 56.1787 | 51.4566 | 10232 | 12018 | 10138 | 7908 | 7671 | 97.0030 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 64.9932 | 93.6517 | 49.7646 | 52.1813 | 7863 | 533 | 7822 | 7896 | 7660 | 97.0111 | |
| gduggal-bwavard | INDEL | D6_15 | * | * | 62.6145 | 59.4780 | 66.1003 | 55.5649 | 15519 | 10573 | 15367 | 7881 | 7658 | 97.1704 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| gduggal-bwavard | INDEL | D6_15 | * | het | 73.6436 | 98.1194 | 58.9409 | 57.7838 | 11374 | 218 | 11286 | 7862 | 7644 | 97.2272 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1835 | 87.6412 | 51.8876 | 46.8905 | 9077 | 1280 | 9044 | 8386 | 7588 | 90.4841 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 46.9955 | 42.3432 | 52.7964 | 40.4686 | 8721 | 11875 | 8666 | 7748 | 7585 | 97.8962 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.3787 | 92.9984 | 46.9277 | 41.3270 | 6867 | 517 | 6843 | 7739 | 7577 | 97.9067 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.5683 | 79.9506 | 83.2528 | 70.9561 | 51513 | 12918 | 52192 | 10499 | 7538 | 71.7973 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| ciseli-custom | INDEL | I1_5 | * | het | 91.4560 | 94.1106 | 88.9472 | 61.0454 | 74385 | 4655 | 74801 | 9295 | 7503 | 80.7208 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3208 | 43.7811 | 51.4831 | 46.1266 | 7994 | 10265 | 7984 | 7524 | 7396 | 98.2988 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8569 | 39.4929 | 49.3052 | 41.4961 | 7211 | 11048 | 7203 | 7406 | 7360 | 99.3789 | |
| ciseli-custom | SNP | ti | * | homalt | 98.8778 | 99.5909 | 98.1749 | 17.4213 | 799754 | 3285 | 797240 | 14821 | 7334 | 49.4838 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.3637 | 60.1216 | 66.9753 | 55.5677 | 18883 | 12525 | 19891 | 9808 | 7269 | 74.1130 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.3637 | 60.1216 | 66.9753 | 55.5677 | 18883 | 12525 | 19891 | 9808 | 7269 | 74.1130 | |