PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24651-24700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | het | 97.8030 | 96.8417 | 98.7837 | 83.8513 | 2269 | 74 | 2274 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | * | 97.4847 | 96.5986 | 98.3871 | 87.4093 | 852 | 30 | 854 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | * | 97.9886 | 97.0574 | 98.9377 | 85.1509 | 2045 | 62 | 2049 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | * | 98.0239 | 97.0856 | 98.9805 | 86.2460 | 2132 | 64 | 2136 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | * | 98.0268 | 97.0787 | 98.9936 | 86.3673 | 2160 | 65 | 2164 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | * | 97.1639 | 96.4981 | 97.8389 | 90.4125 | 496 | 18 | 498 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | * | 97.6365 | 96.7330 | 98.5570 | 88.7837 | 1362 | 46 | 1366 | 20 | 4 | 20.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | * | 77.4194 | 72.7273 | 82.7586 | 80.5369 | 24 | 9 | 24 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | het | 85.0531 | 79.6610 | 91.2281 | 72.1951 | 47 | 12 | 52 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | het | 84.5604 | 78.6885 | 91.3793 | 74.1071 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2924 | 99.3785 | 95.2920 | 69.4798 | 1599 | 10 | 1599 | 79 | 4 | 5.0633 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.0372 | 74.0741 | 1.5504 | 75.3723 | 20 | 7 | 20 | 1270 | 4 | 0.3150 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 11.9658 | 93.3333 | 6.3927 | 89.8892 | 14 | 1 | 14 | 205 | 4 | 1.9512 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | homalt | 95.2567 | 91.2259 | 99.6601 | 92.2128 | 1466 | 141 | 1466 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3491 | 99.6812 | 89.5584 | 44.0081 | 3439 | 11 | 3448 | 402 | 4 | 0.9950 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.9331 | 99.5790 | 85.3775 | 44.4518 | 2129 | 9 | 2137 | 366 | 4 | 1.0929 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 51.5722 | 36.5269 | 87.6923 | 81.3754 | 61 | 106 | 57 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 14.5215 | 7.8459 | 97.3510 | 52.6646 | 220 | 2584 | 147 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 15.8160 | 8.6076 | 97.2973 | 51.3158 | 204 | 2166 | 144 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | het | 81.8620 | 85.0000 | 78.9474 | 92.4453 | 17 | 3 | 30 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.8637 | 44.5230 | 96.1538 | 69.9074 | 126 | 157 | 125 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.6451 | 61.5607 | 98.0861 | 70.4802 | 213 | 133 | 205 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.6959 | 69.6629 | 98.7539 | 35.5422 | 186 | 81 | 317 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_siren | homalt | 93.7374 | 88.6964 | 99.3860 | 68.7586 | 1075 | 137 | 1133 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | homalt | 93.4028 | 88.3721 | 99.0408 | 89.7341 | 418 | 55 | 413 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4271 | 97.3897 | 99.4869 | 56.2693 | 1567 | 42 | 1551 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2185 | 96.7495 | 99.7328 | 29.9465 | 2649 | 89 | 2613 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5864 | 98.0186 | 99.1607 | 45.3115 | 841 | 17 | 827 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | homalt | 95.6171 | 92.6606 | 98.7685 | 92.5912 | 404 | 32 | 401 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1847 | 95.8015 | 98.6083 | 75.1972 | 502 | 22 | 496 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.3897 | 97.0060 | 86.3881 | 76.4855 | 1296 | 40 | 1282 | 202 | 4 | 1.9802 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.1761 | 97.7083 | 87.2368 | 73.1862 | 1407 | 33 | 1367 | 200 | 4 | 2.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.2690 | 95.1945 | 99.4359 | 31.3606 | 1248 | 63 | 1234 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | * | 78.0985 | 94.5098 | 66.5434 | 94.1611 | 723 | 42 | 720 | 362 | 4 | 1.1050 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.5000 | 58.8235 | 66.6667 | 99.8072 | 10 | 7 | 10 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 75.0000 | 90.0000 | 64.2857 | 99.6130 | 9 | 1 | 9 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 76.7278 | 76.1905 | 77.2727 | 99.9025 | 16 | 5 | 17 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.5851 | 93.1694 | 98.1295 | 82.8225 | 682 | 50 | 682 | 13 | 4 | 30.7692 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 94.6597 | 91.8699 | 97.6242 | 87.5504 | 452 | 40 | 452 | 11 | 4 | 36.3636 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 61.2565 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 87.0000 | 94.5652 | 80.5556 | 96.3624 | 174 | 10 | 174 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |