PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24451-24500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | * | 96.8796 | 97.3349 | 96.4286 | 86.1120 | 840 | 23 | 837 | 31 | 4 | 12.9032 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | het | 96.9291 | 98.0149 | 95.8671 | 85.7209 | 1185 | 24 | 1183 | 51 | 4 | 7.8431 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e0 | het | 97.0429 | 98.0892 | 96.0187 | 86.4645 | 1232 | 24 | 1230 | 51 | 4 | 7.8431 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | het | 97.0706 | 98.1073 | 96.0557 | 86.5634 | 1244 | 24 | 1242 | 51 | 4 | 7.8431 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | * | 96.8643 | 97.4293 | 96.3057 | 90.2509 | 758 | 20 | 756 | 29 | 4 | 13.7931 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2392 | 98.5000 | 97.9798 | 61.4786 | 197 | 3 | 194 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5712 | 99.5238 | 99.6187 | 62.3069 | 1045 | 5 | 1045 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2565 | 100.0000 | 98.5240 | 66.2935 | 267 | 0 | 267 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5657 | 99.5192 | 97.6303 | 79.2527 | 207 | 1 | 206 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | * | 95.6449 | 95.8065 | 95.4839 | 89.2324 | 297 | 13 | 296 | 14 | 4 | 28.5714 | |
| ckim-dragen | INDEL | I1_5 | segdup | homalt | 99.4731 | 99.7886 | 99.1597 | 92.5718 | 472 | 1 | 472 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | het | 99.2082 | 98.6412 | 99.7818 | 59.3866 | 2323 | 32 | 2286 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | * | 97.5369 | 97.3770 | 97.6974 | 85.1053 | 297 | 8 | 297 | 7 | 4 | 57.1429 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7368 | 98.6330 | 98.8409 | 85.1301 | 938 | 13 | 938 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2348 | 98.9437 | 99.5277 | 84.3986 | 843 | 9 | 843 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7101 | 99.5369 | 99.8839 | 62.7379 | 3439 | 16 | 3442 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9425 | 99.9507 | 99.9343 | 54.5644 | 6085 | 3 | 6088 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6905 | 99.8338 | 99.5476 | 42.3216 | 11414 | 19 | 11441 | 52 | 4 | 7.6923 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.8470 | 98.2089 | 99.4934 | 48.2524 | 2906 | 53 | 2946 | 15 | 4 | 26.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2515 | 98.6760 | 99.8336 | 71.5436 | 2385 | 32 | 2400 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.7675 | 99.8416 | 99.6935 | 39.2563 | 10715 | 17 | 10732 | 33 | 4 | 12.1212 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8338 | 99.8720 | 99.7956 | 30.8168 | 3901 | 5 | 3905 | 8 | 4 | 50.0000 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | * | 96.5066 | 96.7883 | 96.2264 | 93.0796 | 1326 | 44 | 1326 | 52 | 4 | 7.6923 | |
| ciseli-custom | SNP | * | func_cds | het | 97.0747 | 99.2205 | 95.0198 | 27.5142 | 11074 | 87 | 11047 | 579 | 4 | 0.6908 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.5908 | 97.1532 | 68.8529 | 65.1322 | 2423 | 71 | 2425 | 1097 | 4 | 0.3646 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 75.4717 | 68.9655 | 83.3333 | 68.8312 | 20 | 9 | 20 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 76.3636 | 70.0000 | 84.0000 | 72.2222 | 21 | 9 | 21 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.9729 | 97.1161 | 62.3900 | 67.1535 | 1347 | 40 | 1347 | 812 | 4 | 0.4926 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.1799 | 75.0000 | 15.8576 | 76.7407 | 93 | 31 | 98 | 520 | 4 | 0.7692 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.2009 | 76.9231 | 8.4337 | 82.7562 | 20 | 6 | 21 | 228 | 4 | 1.7544 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.9790 | 96.7259 | 82.3810 | 40.2277 | 2068 | 70 | 2076 | 444 | 4 | 0.9009 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7413 | 99.9261 | 99.5572 | 74.4050 | 1352 | 1 | 1349 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | homalt | 98.5364 | 98.1289 | 98.9474 | 89.1453 | 472 | 9 | 470 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | homalt | 96.3303 | 96.3303 | 96.3303 | 94.4557 | 105 | 4 | 105 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | homalt | 96.5217 | 96.5217 | 96.5217 | 94.9782 | 111 | 4 | 111 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 95.0491 | 112 | 4 | 112 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | * | * | 76.5957 | 90.0000 | 66.6667 | 87.3684 | 9 | 1 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | * | hetalt | 80.0000 | 100.0000 | 66.6667 | 87.3684 | 1 | 0 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002complexvar | * | 75.0000 | 85.7143 | 66.6667 | 74.4681 | 6 | 1 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 74.4681 | 0 | 0 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1163 | 66.6667 | 63.6364 | 84.7222 | 2 | 1 | 7 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 63.6364 | 84.7222 | 0 | 0 | 7 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.3944 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0949 | 93.7500 | 96.4789 | 89.8208 | 150 | 10 | 137 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 92.1829 | 85.6895 | 99.7411 | 68.7184 | 1479 | 247 | 1541 | 4 | 4 | 100.0000 | |