PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24351-24400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 11.2554 | 6.1611 | 65.0000 | 68.2540 | 13 | 198 | 13 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1212 | 1.5945 | 73.3333 | 80.5195 | 7 | 432 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0166 | 97.9695 | 98.0636 | 83.8904 | 579 | 12 | 709 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | * | 96.7770 | 97.6608 | 95.9091 | 94.9039 | 167 | 4 | 211 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0156 | 97.8261 | 96.2185 | 95.0365 | 180 | 4 | 229 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0374 | 97.8378 | 96.2500 | 95.1120 | 181 | 4 | 231 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.5874 | 1.8349 | 80.0000 | 78.6325 | 16 | 856 | 20 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.9476 | 40.5405 | 90.2439 | 86.2416 | 15 | 22 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | homalt | 81.0811 | 83.3333 | 78.9474 | 93.0909 | 10 | 2 | 15 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | * | 90.3114 | 90.6250 | 90.0000 | 92.9577 | 29 | 3 | 36 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 93.9130 | 7 | 0 | 10 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 89.6163 | 39 | 0 | 42 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 60.0000 | 50.0000 | 75.0000 | 60.0000 | 2 | 2 | 12 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 5 | 4 | 80.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | segdup | * | 64.1368 | 51.0638 | 86.2069 | 84.3243 | 24 | 23 | 25 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | het | 53.1401 | 41.6667 | 73.3333 | 84.5361 | 10 | 14 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.3116 | 70.0000 | 94.1860 | 83.6812 | 42 | 18 | 81 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 17.4592 | 9.6774 | 89.1304 | 79.6460 | 21 | 196 | 41 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0458 | 99.0458 | 99.0458 | 70.6113 | 519 | 5 | 519 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.0762 | 99.4760 | 94.7894 | 67.5394 | 1329 | 7 | 1328 | 73 | 4 | 5.4795 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6084 | 99.4152 | 92.0824 | 70.5431 | 850 | 5 | 849 | 73 | 4 | 5.4795 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | homalt | 99.3993 | 98.9600 | 99.8426 | 67.1804 | 3806 | 40 | 3806 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 77.3061 | 64.3777 | 96.7320 | 84.4828 | 150 | 83 | 148 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.6632 | 61.3084 | 98.7952 | 82.4710 | 328 | 207 | 328 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.2442 | 67.8279 | 98.2249 | 72.7639 | 331 | 157 | 332 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6103 | 83.5498 | 98.9744 | 59.1195 | 386 | 76 | 386 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.1567 | 70.5747 | 92.7492 | 83.3752 | 307 | 128 | 307 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.9237 | 62.4049 | 96.9194 | 87.0711 | 410 | 247 | 409 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.7551 | 27.4074 | 60.6557 | 81.1728 | 37 | 98 | 37 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6526 | 70.7519 | 99.3664 | 48.9213 | 941 | 389 | 941 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | het | 84.4444 | 73.8627 | 98.5651 | 92.5841 | 893 | 316 | 893 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | het | 88.8512 | 80.5007 | 99.1347 | 90.4602 | 1833 | 444 | 1833 | 16 | 4 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.7995 | 96.8208 | 98.7981 | 64.4748 | 335 | 11 | 411 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7494 | 99.5000 | 98.0100 | 56.6810 | 199 | 1 | 197 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1368 | 98.7619 | 99.5146 | 57.7002 | 1037 | 13 | 1025 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1802 | 96.7672 | 99.6350 | 61.0934 | 449 | 15 | 1092 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8506 | 99.5370 | 98.1735 | 65.0160 | 215 | 1 | 215 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | * | 96.0396 | 95.4098 | 96.6777 | 83.6945 | 291 | 14 | 291 | 10 | 4 | 40.0000 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1597 | 98.9715 | 99.3486 | 67.2313 | 4715 | 49 | 4728 | 31 | 4 | 12.9032 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5931 | 99.3054 | 99.8825 | 45.7630 | 3431 | 24 | 3401 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | ti | HG002compoundhet | homalt | 99.5445 | 99.1480 | 99.9443 | 27.6293 | 7331 | 63 | 7173 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 52.6316 | 50.0000 | 55.5556 | 99.5007 | 10 | 10 | 10 | 8 | 4 | 50.0000 | |