PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24201-24250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | func_cds | het | 99.4112 | 99.2709 | 99.5519 | 36.3268 | 8442 | 62 | 8442 | 38 | 4 | 10.5263 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3459 | 90.0692 | 96.8700 | 86.2669 | 1823 | 201 | 1826 | 59 | 4 | 6.7797 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 66.2942 | 51.5837 | 92.7419 | 97.1812 | 114 | 107 | 115 | 9 | 4 | 44.4444 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7303 | 93.9215 | 99.7122 | 49.8216 | 5887 | 381 | 5890 | 17 | 4 | 23.5294 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | homalt | 77.1723 | 62.8434 | 99.9652 | 71.1284 | 11506 | 6803 | 11495 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | homalt | 77.3423 | 63.0691 | 99.9657 | 71.0565 | 11664 | 6830 | 11653 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.7695 | 83.2661 | 95.0518 | 86.1448 | 826 | 166 | 826 | 43 | 4 | 9.3023 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3734 | 80.4048 | 98.0952 | 76.9380 | 1748 | 426 | 1751 | 34 | 4 | 11.7647 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.7124 | 80.0288 | 97.0280 | 79.4096 | 1110 | 277 | 1110 | 34 | 4 | 11.7647 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1243 | 68.8494 | 98.7257 | 59.8978 | 1472 | 666 | 1472 | 19 | 4 | 21.0526 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | * | 55.0840 | 38.0930 | 99.4371 | 95.3509 | 1590 | 2584 | 1590 | 9 | 4 | 44.4444 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | het | 58.2153 | 41.1889 | 99.2373 | 95.9951 | 1171 | 1672 | 1171 | 9 | 4 | 44.4444 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 100.0000 | 62.5000 | 99.6580 | 10 | 0 | 10 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.1543 | 7.1138 | 87.1795 | 80.6931 | 35 | 457 | 34 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 83.7592 | 72.2584 | 99.6141 | 35.3161 | 1555 | 597 | 1549 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | homalt | 95.5388 | 92.5344 | 98.7448 | 78.4685 | 471 | 38 | 472 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | homalt | 96.4972 | 94.1257 | 98.9914 | 79.7491 | 689 | 43 | 687 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | homalt | 96.3491 | 93.7984 | 99.0424 | 81.2275 | 726 | 48 | 724 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | segdup | homalt | 94.7011 | 90.3125 | 99.5381 | 91.1777 | 867 | 93 | 862 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 87.7049 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 20.0000 | 87.0690 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.6485 | 0 | 0 | 17 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.4348 | 95.4858 | 0 | 0 | 14 | 32 | 4 | 12.5000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 29.4118 | 94.4444 | 0 | 0 | 10 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 28.1250 | 94.2342 | 0 | 0 | 9 | 23 | 4 | 17.3913 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.0000 | 94.1995 | 0 | 0 | 16 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.1429 | 93.1873 | 0 | 0 | 9 | 19 | 4 | 21.0526 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 29.6296 | 93.1122 | 0 | 0 | 8 | 19 | 4 | 21.0526 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.0093 | 94.1144 | 0 | 0 | 61 | 46 | 4 | 8.6957 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 55.3398 | 93.8763 | 0 | 0 | 57 | 46 | 4 | 8.6957 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 59.7826 | 94.1289 | 0 | 0 | 55 | 37 | 4 | 10.8108 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 57.9545 | 93.8761 | 0 | 0 | 51 | 37 | 4 | 10.8108 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 56.3830 | 94.8996 | 0 | 0 | 53 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 46.7532 | 95.2615 | 0 | 0 | 36 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 55.7895 | 95.3086 | 0 | 0 | 53 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 46.1538 | 95.6594 | 0 | 0 | 36 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 56.2500 | 95.3466 | 0 | 0 | 54 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 46.8354 | 95.6807 | 0 | 0 | 37 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 52.5424 | 95.8421 | 0 | 0 | 31 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 45.0980 | 95.9363 | 0 | 0 | 23 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 50.0000 | 96.0610 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 42.5926 | 96.1401 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 96.1443 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 42.5926 | 96.2185 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 72.3100 | 56.8934 | 99.1870 | 55.0110 | 619 | 469 | 610 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 50.8475 | 78.9474 | 37.5000 | 94.1349 | 15 | 4 | 15 | 25 | 4 | 16.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 67.7419 | 75.0000 | 61.7647 | 95.8231 | 21 | 7 | 21 | 13 | 4 | 30.7692 | |