PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24151-24200 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | segdup | het | 98.1746 | 97.0158 | 99.3614 | 92.7228 | 11671 | 359 | 11669 | 75 | 4 | 5.3333 | |
| asubramanian-gatk | SNP | ti | segdup | homalt | 98.2382 | 96.5889 | 99.9449 | 87.7431 | 7249 | 256 | 7249 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5497 | 99.6000 | 99.4995 | 76.1480 | 2988 | 12 | 2982 | 15 | 4 | 26.6667 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7788 | 100.0000 | 99.5585 | 74.0995 | 1353 | 0 | 1353 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8660 | 99.8235 | 99.9086 | 58.4519 | 16400 | 29 | 16399 | 15 | 4 | 26.6667 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | het | 97.4344 | 98.4329 | 96.4559 | 87.7838 | 1005 | 16 | 1007 | 37 | 4 | 10.8108 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.6014 | 99.2958 | 97.9167 | 88.2112 | 282 | 2 | 282 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | homalt | 99.2502 | 99.4536 | 99.0476 | 85.8491 | 728 | 4 | 728 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | homalt | 99.1509 | 99.4758 | 98.8281 | 86.7266 | 759 | 4 | 759 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | homalt | 99.1629 | 99.4832 | 98.8447 | 86.8279 | 770 | 4 | 770 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | * | 97.3095 | 98.2490 | 96.3878 | 92.6248 | 505 | 9 | 507 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | het | 97.6001 | 98.4547 | 96.7603 | 91.1986 | 892 | 14 | 896 | 30 | 4 | 13.3333 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | het | 97.5914 | 98.3766 | 96.8187 | 91.2287 | 909 | 15 | 913 | 30 | 4 | 13.3333 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.8855 | 99.1870 | 98.5859 | 89.3019 | 488 | 4 | 488 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | * | 95.9612 | 97.3770 | 94.5860 | 95.9242 | 297 | 8 | 297 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | * | 96.2742 | 97.5831 | 95.0000 | 96.1621 | 323 | 8 | 323 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | * | 96.2963 | 97.5976 | 95.0292 | 96.2426 | 325 | 8 | 325 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6197 | 95.7908 | 99.5198 | 33.5726 | 751 | 33 | 829 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.9086 | 95.6522 | 79.6296 | 95.3807 | 44 | 2 | 43 | 11 | 4 | 36.3636 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.3684 | 92.2222 | 83.0000 | 94.8823 | 83 | 7 | 83 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.3481 | 95.8333 | 78.5714 | 95.8854 | 46 | 2 | 44 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7196 | 86.7545 | 99.5656 | 30.9538 | 1120 | 171 | 1146 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8950 | 99.8510 | 99.9390 | 54.8240 | 14748 | 22 | 14750 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7416 | 96.3077 | 99.2188 | 22.9844 | 626 | 24 | 635 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.2188 | 98.9571 | 97.4914 | 85.7120 | 854 | 9 | 855 | 22 | 4 | 18.1818 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.5653 | 99.2556 | 97.8845 | 84.2173 | 1200 | 9 | 1203 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.5784 | 99.2038 | 97.9608 | 84.7707 | 1246 | 10 | 1249 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 98.2056 | 99.0237 | 97.4008 | 89.1607 | 710 | 7 | 712 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3127 | 99.0826 | 97.5547 | 89.6483 | 756 | 7 | 758 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 81.1615 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.1443 | 80.8806 | 99.2888 | 68.7833 | 698 | 165 | 698 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 85.1332 | 74.3655 | 99.5470 | 43.0323 | 879 | 303 | 879 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 40.1515 | 25.7282 | 91.3793 | 89.3186 | 53 | 153 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.9130 | 59.4406 | 97.7011 | 62.3377 | 170 | 116 | 170 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.4286 | 60.9756 | 86.2069 | 85.2041 | 25 | 16 | 25 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.6379 | 51.4241 | 98.7842 | 56.3081 | 325 | 307 | 325 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | * | 79.0667 | 66.2295 | 98.0769 | 90.4236 | 202 | 103 | 204 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | func_cds | * | 99.4779 | 99.2121 | 99.7452 | 34.2475 | 18007 | 143 | 18007 | 46 | 4 | 8.6957 | |
| gduggal-bwaplat | SNP | * | func_cds | het | 99.4076 | 99.2295 | 99.5864 | 39.9773 | 11075 | 86 | 11075 | 46 | 4 | 8.6957 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 59.7926 | 44.5455 | 90.9091 | 96.3211 | 49 | 61 | 50 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | homalt | 75.9766 | 61.2688 | 99.9763 | 72.3553 | 16863 | 10660 | 16851 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | homalt | 76.1334 | 61.4729 | 99.9766 | 72.2874 | 17087 | 10709 | 17075 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | func_cds | * | 99.4984 | 99.2747 | 99.7231 | 31.1374 | 13687 | 100 | 13687 | 38 | 4 | 10.5263 | |