PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24101-24150 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2753 | 99.1071 | 99.4439 | 65.2571 | 3219 | 29 | 3219 | 18 | 4 | 22.2222 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0857 | 99.0613 | 99.1102 | 68.1518 | 2005 | 19 | 2005 | 18 | 4 | 22.2222 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7919 | 99.6278 | 99.9566 | 63.4476 | 11509 | 43 | 11509 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.5149 | 99.7222 | 99.3084 | 87.5709 | 718 | 2 | 718 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7919 | 99.6278 | 99.9566 | 63.4476 | 11509 | 43 | 11509 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | ti | segdup | homalt | 99.9000 | 99.8534 | 99.9467 | 87.4231 | 7494 | 11 | 7494 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.6221 | 99.4020 | 99.8433 | 61.4866 | 3823 | 23 | 3823 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.5036 | 99.2796 | 99.7286 | 68.6827 | 2205 | 16 | 2205 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | homalt | 99.2393 | 99.0654 | 99.4138 | 85.1935 | 848 | 8 | 848 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.2513 | 99.0395 | 99.4641 | 86.2166 | 928 | 9 | 928 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | homalt | 99.2585 | 99.0486 | 99.4692 | 86.2982 | 937 | 9 | 937 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.8851 | 96.3010 | 99.5221 | 33.7816 | 755 | 29 | 833 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.2655 | 90.8046 | 87.7778 | 94.9153 | 79 | 8 | 79 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.6603 | 93.4783 | 80.7692 | 95.8031 | 43 | 3 | 42 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.1304 | 91.1111 | 87.2340 | 95.4369 | 82 | 8 | 82 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.1148 | 93.7500 | 79.6296 | 96.2211 | 45 | 3 | 43 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.3401 | 90.7216 | 88.0000 | 95.2584 | 88 | 9 | 88 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.8949 | 94.1176 | 80.7018 | 96.1039 | 48 | 3 | 46 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2818 | 98.6207 | 97.9452 | 69.3920 | 429 | 6 | 429 | 9 | 4 | 44.4444 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.0558 | 96.7692 | 99.3769 | 23.2975 | 629 | 21 | 638 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 96.9783 | 96.6396 | 97.3193 | 86.2786 | 834 | 29 | 835 | 23 | 4 | 17.3913 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0534 | 94.5409 | 97.6150 | 85.1242 | 1143 | 66 | 1146 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0772 | 94.5064 | 97.7011 | 85.6419 | 1187 | 69 | 1190 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 95.9899 | 94.3218 | 97.7180 | 85.7871 | 1196 | 72 | 1199 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 96.6476 | 96.3738 | 96.9231 | 89.6121 | 691 | 26 | 693 | 22 | 4 | 18.1818 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 96.6463 | 96.1992 | 97.0976 | 90.1019 | 734 | 29 | 736 | 22 | 4 | 18.1818 | |
| astatham-gatk | INDEL | D1_5 | map_siren | homalt | 99.6154 | 99.6575 | 99.5734 | 81.2660 | 1164 | 4 | 1167 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4857 | 99.3958 | 99.5758 | 60.5358 | 1645 | 10 | 1643 | 7 | 4 | 57.1429 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7147 | 100.0000 | 97.4619 | 47.3262 | 192 | 0 | 192 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | * | 96.0836 | 96.3351 | 95.8333 | 93.8184 | 184 | 7 | 184 | 8 | 4 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.3513 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4274 | 94.3750 | 96.5035 | 89.8148 | 151 | 9 | 138 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | * | hetalt | 97.1674 | 94.5243 | 99.9624 | 62.1019 | 10582 | 613 | 10645 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 98.0296 | 96.3499 | 99.7688 | 70.6232 | 1663 | 63 | 1726 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3238 | 99.2366 | 99.4111 | 74.7171 | 1690 | 13 | 1688 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.4765 | 94.0254 | 99.0588 | 84.2359 | 1259 | 80 | 1263 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 80.6440 | 518 | 0 | 518 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.5143 | 94.0789 | 99.0790 | 85.3464 | 1287 | 81 | 1291 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 81.9892 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.5074 | 94.0502 | 99.0964 | 85.4242 | 1312 | 83 | 1316 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 82.0606 | 540 | 0 | 540 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.3135 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | HG002complexvar | het | 99.2512 | 98.7261 | 99.7819 | 59.6303 | 2325 | 30 | 2288 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.2350 | 94.7249 | 99.8818 | 43.0518 | 3340 | 186 | 3381 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8787 | 94.0922 | 99.8354 | 35.2518 | 2389 | 150 | 2426 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8256 | 93.9864 | 99.8416 | 36.8816 | 2485 | 159 | 2522 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.2350 | 94.7249 | 99.8818 | 43.0518 | 3340 | 186 | 3381 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | * | 95.6376 | 93.4426 | 97.9381 | 85.2956 | 285 | 20 | 285 | 6 | 4 | 66.6667 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | * | 39.2304 | 24.4115 | 99.8340 | 94.1489 | 4812 | 14900 | 4810 | 8 | 4 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | het | 42.4790 | 26.9846 | 99.7608 | 94.8360 | 3338 | 9032 | 3336 | 8 | 4 | 50.0000 | |