PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23851-23900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | het | 97.0778 | 97.1596 | 96.9961 | 85.3472 | 992 | 29 | 1001 | 31 | 4 | 12.9032 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | homalt | 98.2456 | 98.5915 | 97.9021 | 86.6480 | 280 | 4 | 280 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 87.6408 | 455 | 7 | 455 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 88.7981 | 474 | 7 | 474 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.9704 | 49.6410 | 98.3092 | 51.1216 | 484 | 491 | 407 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 62.1033 | 45.2072 | 99.1667 | 43.6090 | 731 | 886 | 595 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.7509 | 80.8917 | 93.5252 | 60.6232 | 127 | 30 | 130 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8753 | 98.4496 | 97.3077 | 64.2857 | 254 | 4 | 253 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.2058 | 97.1235 | 97.2881 | 83.7734 | 574 | 17 | 574 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4722 | 97.1774 | 97.7688 | 87.3525 | 482 | 14 | 482 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 97.5138 | 97.2452 | 97.7839 | 84.6774 | 706 | 20 | 706 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 97.6378 | 97.3822 | 97.8947 | 85.3565 | 744 | 20 | 744 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | het | 97.6562 | 97.4026 | 97.9112 | 85.4539 | 750 | 20 | 750 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.4512 | 54.9658 | 98.0843 | 26.8908 | 321 | 263 | 256 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3190 | 98.8713 | 97.7728 | 36.2216 | 438 | 5 | 439 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.8527 | 89.3939 | 86.3636 | 84.4706 | 59 | 7 | 57 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.3508 | 91.6667 | 95.0980 | 76.7654 | 99 | 9 | 97 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | * | 98.3571 | 96.8735 | 99.8869 | 59.3116 | 12363 | 399 | 12363 | 14 | 4 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | homalt | 99.6428 | 99.3765 | 99.9105 | 65.1370 | 4463 | 28 | 4463 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | het | 98.5415 | 97.2791 | 99.8371 | 55.5647 | 17769 | 497 | 17770 | 29 | 4 | 13.7931 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | het | 98.5679 | 97.3564 | 99.8099 | 58.2477 | 18377 | 499 | 18379 | 35 | 4 | 11.4286 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | het | 98.5813 | 97.3804 | 99.8121 | 58.3672 | 18587 | 500 | 18589 | 35 | 4 | 11.4286 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | * | 97.8455 | 95.9038 | 99.8675 | 65.1893 | 7539 | 322 | 7538 | 10 | 4 | 40.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | homalt | 99.5276 | 99.2032 | 99.8541 | 71.1520 | 2739 | 22 | 2738 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | * | 97.1749 | 94.6495 | 99.8389 | 79.6190 | 4334 | 245 | 4337 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | * | 97.3703 | 95.0080 | 99.8532 | 81.1041 | 4758 | 250 | 4761 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | * | 97.3857 | 95.0355 | 99.8552 | 81.2214 | 4824 | 252 | 4827 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | tv | map_siren | het | 99.1276 | 98.6962 | 99.5628 | 47.7162 | 28236 | 373 | 28241 | 124 | 4 | 3.2258 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.4186 | 80.0000 | 69.5652 | 99.3068 | 16 | 4 | 16 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | het | 52.0833 | 36.6569 | 89.9281 | 85.9312 | 125 | 216 | 125 | 14 | 4 | 28.5714 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.2733 | 88.9535 | 89.5954 | 83.6638 | 153 | 19 | 155 | 18 | 4 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | * | 45.7741 | 60.7143 | 36.7347 | 93.3243 | 17 | 11 | 18 | 31 | 4 | 12.9032 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 33.3333 | 100.0000 | 20.0000 | 92.9178 | 5 | 0 | 5 | 20 | 4 | 20.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1222 | 94.0230 | 98.3173 | 61.3742 | 409 | 26 | 409 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | het | 67.0857 | 51.2397 | 97.1204 | 79.0685 | 372 | 354 | 371 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | het | 68.6425 | 53.0105 | 97.3494 | 80.9546 | 405 | 359 | 404 | 11 | 4 | 36.3636 | |