PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23751-23800 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | segdup | * | 99.6041 | 99.8055 | 99.4035 | 89.2386 | 19499 | 38 | 19497 | 117 | 4 | 3.4188 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | * | 99.1204 | 99.1249 | 99.1158 | 68.4908 | 10987 | 97 | 10986 | 98 | 4 | 4.0816 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | * | 99.1952 | 99.2757 | 99.1147 | 70.0226 | 15900 | 116 | 15898 | 142 | 4 | 2.8169 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | * | 99.2122 | 99.2904 | 99.1340 | 71.8789 | 16372 | 117 | 16370 | 143 | 4 | 2.7972 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | * | 99.2171 | 99.2976 | 99.1368 | 71.9418 | 16540 | 117 | 16538 | 144 | 4 | 2.7778 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.8500 | 94.7664 | 99.0272 | 74.3896 | 507 | 28 | 509 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 87.8361 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | segdup | homalt | 99.2685 | 98.9583 | 99.5807 | 93.3565 | 950 | 10 | 950 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7849 | 98.6650 | 98.9051 | 68.7452 | 813 | 11 | 813 | 9 | 4 | 44.4444 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3066 | 98.4234 | 98.1900 | 73.3092 | 437 | 7 | 434 | 8 | 4 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.5916 | 78.3357 | 99.3277 | 35.7451 | 546 | 151 | 591 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.0575 | 80.4348 | 90.2439 | 53.9326 | 37 | 9 | 37 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | homalt | 98.2249 | 96.9626 | 99.5204 | 86.9197 | 830 | 26 | 830 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | homalt | 98.3252 | 97.1185 | 99.5624 | 88.0052 | 910 | 27 | 910 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | homalt | 98.2869 | 97.0402 | 99.5662 | 88.1078 | 918 | 28 | 918 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 75.4415 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.4024 | 91.3043 | 82.0000 | 93.3066 | 42 | 4 | 41 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.0110 | 90.0000 | 88.0435 | 93.0983 | 81 | 9 | 81 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.7606 | 91.6667 | 82.3529 | 94.1913 | 44 | 4 | 42 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.2308 | 89.6907 | 88.7755 | 92.8467 | 87 | 10 | 87 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.5233 | 92.1569 | 83.3333 | 94.0199 | 47 | 4 | 45 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7252 | 99.5058 | 99.9456 | 54.0983 | 14697 | 73 | 14698 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7406 | 99.4924 | 98.0000 | 58.7629 | 196 | 1 | 196 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | * | 98.1075 | 97.6103 | 98.6098 | 84.5171 | 1062 | 26 | 1064 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1990 | 97.7253 | 98.6772 | 85.2305 | 1117 | 26 | 1119 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2208 | 97.7528 | 98.6934 | 85.3084 | 1131 | 26 | 1133 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8058 | 97.3008 | 98.3161 | 87.6421 | 757 | 21 | 759 | 13 | 4 | 30.7692 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | homalt | 99.5289 | 99.4007 | 99.6575 | 79.9209 | 1161 | 7 | 1164 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.5545 | 91.3876 | 97.9487 | 73.9305 | 191 | 18 | 191 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 49.7048 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 91.4961 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9473 | 95.6422 | 98.2885 | 83.2788 | 417 | 19 | 402 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 84.1463 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | het | 98.1424 | 96.5605 | 99.7771 | 58.4090 | 2274 | 81 | 2238 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9507 | 99.9671 | 99.9343 | 54.3615 | 6086 | 2 | 6086 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | * | 80.7714 | 71.4286 | 92.9260 | 89.3893 | 5 | 2 | 289 | 22 | 4 | 18.1818 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6649 | 76.4706 | 36.7742 | 94.0316 | 52 | 16 | 57 | 98 | 4 | 4.0816 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 71.0414 | 97.4522 | 55.8935 | 62.8531 | 153 | 4 | 147 | 116 | 4 | 3.4483 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1168 | 99.0593 | 99.1743 | 78.7979 | 1053 | 10 | 1081 | 9 | 4 | 44.4444 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.7711 | 82.6667 | 91.3043 | 65.6716 | 62 | 13 | 63 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5611 | 76.9231 | 89.0909 | 67.2619 | 10 | 3 | 49 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 84.7106 | 74.5614 | 98.0583 | 87.3775 | 170 | 58 | 202 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.4395 | 75.6198 | 98.1900 | 87.8035 | 183 | 59 | 217 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.8330 | 76.2097 | 98.2379 | 87.7562 | 189 | 59 | 223 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.0405 | 98.5626 | 97.5238 | 64.3342 | 480 | 7 | 512 | 13 | 4 | 30.7692 | |