PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23351-23400 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | * | 82.0826 | 74.3902 | 91.5493 | 87.6522 | 61 | 21 | 65 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | * | 82.0089 | 74.1176 | 91.7808 | 87.5000 | 63 | 22 | 67 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | homalt | 91.1852 | 92.0000 | 90.3846 | 91.3333 | 46 | 4 | 47 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.4156 | 0 | 1 | 0 | 16 | 5 | 31.2500 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.9276 | 91.7603 | 90.1099 | 64.2202 | 245 | 22 | 246 | 27 | 5 | 18.5185 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | * | 93.7753 | 95.1613 | 92.4290 | 89.6642 | 295 | 15 | 293 | 24 | 5 | 20.8333 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | het | 77.0270 | 75.0000 | 79.1667 | 35.1351 | 18 | 6 | 19 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | tv | * | hetalt | 98.6127 | 97.9334 | 99.3015 | 55.2138 | 853 | 18 | 853 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5930 | 99.2808 | 99.9072 | 72.4630 | 5384 | 39 | 5384 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3262 | 99.0514 | 99.6025 | 88.3465 | 1253 | 12 | 1253 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5930 | 99.2808 | 99.9072 | 72.4630 | 5384 | 39 | 5384 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0589 | 60.6050 | 95.1907 | 94.3590 | 1723 | 1120 | 1722 | 87 | 5 | 5.7471 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | homalt | 96.0216 | 93.3159 | 98.8889 | 83.3218 | 712 | 51 | 712 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.9415 | 93.1525 | 98.9026 | 83.4356 | 721 | 53 | 721 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.3431 | 83.7398 | 98.0769 | 74.6548 | 309 | 60 | 306 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 94.3489 | 95.0495 | 93.6585 | 92.6126 | 192 | 10 | 192 | 13 | 5 | 38.4615 | |
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | * | 70.2703 | 68.4211 | 72.2222 | 45.4545 | 13 | 6 | 13 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | het | 70.0000 | 87.5000 | 58.3333 | 47.8261 | 7 | 1 | 7 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | homalt | 98.9952 | 98.6820 | 99.3103 | 43.9072 | 1198 | 16 | 1152 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5657 | 90.8582 | 98.5887 | 60.6037 | 487 | 49 | 489 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0687 | 94.5254 | 99.7527 | 45.0883 | 2400 | 139 | 2420 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 63.0742 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9685 | 94.3268 | 99.7624 | 46.4589 | 2494 | 150 | 2519 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0671 | 97.7492 | 98.3871 | 63.8273 | 304 | 7 | 305 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3152 | 95.0875 | 99.6497 | 51.5280 | 1684 | 87 | 1707 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.7782 | 98.2578 | 97.3034 | 68.5775 | 4681 | 83 | 4763 | 132 | 5 | 3.7879 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4158 | 99.1539 | 99.6791 | 63.8395 | 9610 | 82 | 9630 | 31 | 5 | 16.1290 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3904 | 99.2623 | 99.5188 | 66.4857 | 6190 | 46 | 6205 | 30 | 5 | 16.6667 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | homalt | 99.6340 | 99.4722 | 99.7963 | 86.3079 | 2450 | 13 | 2450 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | het | 98.5032 | 97.2856 | 99.7516 | 37.6347 | 9247 | 258 | 9237 | 23 | 5 | 21.7391 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | het | 98.4476 | 97.1463 | 99.7841 | 64.1912 | 12017 | 353 | 12019 | 26 | 5 | 19.2308 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | het | 98.4904 | 97.2440 | 99.7691 | 66.6179 | 12526 | 355 | 12529 | 29 | 5 | 17.2414 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | het | 98.4983 | 97.2647 | 99.7636 | 66.7853 | 12659 | 356 | 12661 | 30 | 5 | 16.6667 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | homalt | 99.6280 | 99.5426 | 99.7136 | 87.3322 | 1741 | 8 | 1741 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | * | 98.9891 | 98.2741 | 99.7146 | 44.8855 | 8769 | 154 | 8736 | 25 | 5 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | het | 98.9516 | 98.2617 | 99.6512 | 54.6439 | 15149 | 268 | 15144 | 53 | 5 | 9.4340 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | het | 98.9599 | 98.3013 | 99.6273 | 57.1739 | 15509 | 268 | 15505 | 58 | 5 | 8.6207 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | het | 98.9548 | 98.3185 | 99.5995 | 57.2767 | 15670 | 268 | 15666 | 63 | 5 | 7.9365 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | het | 98.6886 | 97.7286 | 99.6676 | 58.7142 | 9896 | 230 | 9895 | 33 | 5 | 15.1515 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | het | 98.7191 | 97.7974 | 99.6584 | 61.3796 | 10212 | 230 | 10211 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| ltrigg-rtg1 | SNP | tv | map_siren | homalt | 99.8926 | 99.8318 | 99.9535 | 54.5447 | 17211 | 29 | 17205 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2666 | 89.8204 | 96.9880 | 69.6527 | 150 | 17 | 161 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3113 | 99.2548 | 99.3680 | 72.5172 | 3596 | 27 | 3616 | 23 | 5 | 21.7391 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4045 | 98.9789 | 99.8338 | 50.4652 | 6010 | 62 | 6006 | 10 | 5 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | * | 98.9993 | 98.7872 | 99.2123 | 93.0351 | 2525 | 31 | 2519 | 20 | 5 | 25.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.9021 | 98.3051 | 99.5064 | 29.1608 | 928 | 16 | 1008 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.1973 | 91.2471 | 99.5050 | 29.3294 | 1178 | 113 | 1206 | 6 | 5 | 83.3333 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6720 | 99.5235 | 99.8208 | 51.0416 | 6684 | 32 | 6686 | 12 | 5 | 41.6667 | |