PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23251-23300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | het | 54.5455 | 60.0000 | 50.0000 | 62.5000 | 6 | 4 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 37 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 16 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.9688 | 61.9247 | 98.2517 | 67.2018 | 296 | 182 | 281 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 26.6325 | 16.3265 | 72.2222 | 65.3846 | 8 | 41 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6458 | 97.9754 | 99.3253 | 54.0950 | 1355 | 28 | 1325 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0804 | 98.3246 | 99.8480 | 50.5717 | 5986 | 102 | 5913 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 34.3511 | 83.3333 | 21.6346 | 92.3048 | 85 | 17 | 90 | 326 | 5 | 1.5337 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.2657 | 96.6139 | 84.7002 | 79.3155 | 1769 | 62 | 1766 | 319 | 5 | 1.5674 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4108 | 97.4761 | 99.3635 | 46.7420 | 1429 | 37 | 1405 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6335 | 98.6470 | 98.6200 | 49.6901 | 4010 | 55 | 4002 | 56 | 5 | 8.9286 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 29.4957 | 83.3333 | 17.9191 | 92.6664 | 55 | 11 | 62 | 284 | 5 | 1.7606 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0000 | 87.5000 | 73.6842 | 79.3478 | 14 | 2 | 14 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | het | 86.2745 | 91.6667 | 81.4815 | 94.7674 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.1762 | 96.3320 | 98.0354 | 75.0368 | 499 | 19 | 499 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 95.0000 | 98.9583 | 91.3462 | 93.7008 | 190 | 2 | 190 | 18 | 5 | 27.7778 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.8571 | 80.5556 | 85.2941 | 66.0000 | 29 | 7 | 29 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.3793 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | * | 62.2222 | 56.0000 | 70.0000 | 95.3052 | 14 | 11 | 14 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 68.7500 | 73.3333 | 64.7059 | 95.4787 | 11 | 4 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 62.2222 | 56.0000 | 70.0000 | 95.9267 | 14 | 11 | 14 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 68.7500 | 73.3333 | 64.7059 | 96.0465 | 11 | 4 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 68.7500 | 64.7059 | 96.1625 | 11 | 5 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | SNP | * | segdup | het | 96.9575 | 99.5207 | 94.5230 | 93.2841 | 17234 | 83 | 17241 | 999 | 5 | 0.5005 | |
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.3623 | 98.6138 | 92.3184 | 52.1702 | 4624 | 65 | 4639 | 386 | 5 | 1.2953 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.7189 | 93.6864 | 99.9542 | 31.7179 | 12895 | 869 | 13083 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6962 | 93.6431 | 99.9550 | 34.4875 | 13140 | 892 | 13333 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.5731 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4859 | 99.1534 | 99.8206 | 46.3856 | 6676 | 57 | 6678 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.5332 | 1219 | 8 | 1219 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | homalt | 99.2206 | 99.3755 | 99.0661 | 82.8094 | 1273 | 8 | 1273 | 12 | 5 | 41.6667 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.1660 | 39.1892 | 65.9574 | 92.3328 | 29 | 45 | 31 | 16 | 5 | 31.2500 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 65.1353 | 53.6585 | 82.8571 | 85.6026 | 198 | 171 | 290 | 60 | 5 | 8.3333 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | * | 80.7499 | 74.8538 | 87.6543 | 97.7406 | 128 | 43 | 142 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | het | 80.9816 | 79.2793 | 82.7586 | 97.8940 | 88 | 23 | 96 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | * | 81.1136 | 75.5435 | 87.5706 | 97.8091 | 139 | 45 | 155 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | het | 81.0385 | 79.3388 | 82.8125 | 97.9338 | 96 | 25 | 106 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | * | 81.2198 | 75.6757 | 87.6404 | 97.8476 | 140 | 45 | 156 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | het | 81.1906 | 79.5082 | 82.9457 | 97.9666 | 97 | 25 | 107 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 36.9914 | 25.6716 | 66.1677 | 73.1295 | 258 | 747 | 221 | 113 | 5 | 4.4248 | |