PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23101-23150 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | segdup | * | 98.8248 | 98.0778 | 99.5833 | 94.7773 | 8368 | 164 | 8364 | 35 | 5 | 14.2857 | |
| ckim-vqsr | SNP | tv | segdup | homalt | 98.5612 | 97.3132 | 99.8416 | 90.0895 | 3151 | 87 | 3151 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.7364 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9027 | 95.4955 | 96.3134 | 65.1685 | 212 | 10 | 209 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.1391 | 98.4283 | 97.8516 | 85.3798 | 501 | 8 | 501 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.9231 | 96.3983 | 99.4970 | 32.4728 | 910 | 34 | 989 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8861 | 95.1429 | 98.6945 | 35.5219 | 333 | 17 | 378 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4819 | 99.6109 | 99.3532 | 78.1854 | 1536 | 6 | 1536 | 10 | 5 | 50.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0410 | 89.1557 | 99.4928 | 31.2609 | 1151 | 140 | 1177 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 100.0000 | 99.8638 | 51.2807 | 3666 | 0 | 3666 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 98.8105 | 98.8095 | 98.8115 | 84.8192 | 1826 | 22 | 1829 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 98.8260 | 98.7990 | 98.8530 | 85.3498 | 1892 | 23 | 1896 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8405 | 98.8138 | 98.8671 | 85.4314 | 1916 | 23 | 1920 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | * | 99.2924 | 99.2916 | 99.2932 | 82.3565 | 3504 | 25 | 3512 | 25 | 5 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4466 | 96.5190 | 98.3923 | 72.1076 | 305 | 11 | 306 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9809 | 98.0851 | 97.8769 | 63.9633 | 461 | 9 | 461 | 10 | 5 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.6516 | 91.0112 | 96.4497 | 70.6087 | 162 | 16 | 163 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.9712 | 94.0678 | 97.9532 | 66.6016 | 333 | 21 | 335 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4422 | 99.5809 | 99.3038 | 58.0347 | 4277 | 18 | 4279 | 30 | 5 | 16.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6035 | 99.5149 | 99.6923 | 54.6489 | 6154 | 30 | 6156 | 19 | 5 | 26.3158 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7690 | 74.1259 | 93.6937 | 90.8036 | 106 | 37 | 104 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | * | map_l150_m0_e0 | homalt | 99.6815 | 99.4864 | 99.8772 | 74.1921 | 4068 | 21 | 4068 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.4705 | 99.1474 | 99.7957 | 86.3912 | 2442 | 21 | 2442 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.4958 | 99.1809 | 99.8127 | 87.5461 | 2664 | 22 | 2664 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.5018 | 99.1906 | 99.8149 | 87.6004 | 2696 | 22 | 2696 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2210 | 98.8562 | 99.5885 | 62.9799 | 1210 | 14 | 1210 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.5405 | 88.1579 | 93.0556 | 89.6552 | 134 | 18 | 134 | 10 | 5 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.7447 | 99.8882 | 43.9520 | 6252 | 16 | 6253 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | homalt | 99.8003 | 99.6656 | 99.9355 | 61.1047 | 7748 | 26 | 7748 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | het | 98.3472 | 97.2372 | 99.4829 | 88.9494 | 2886 | 82 | 2886 | 15 | 5 | 33.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9773 | 97.5806 | 98.3773 | 68.8271 | 968 | 24 | 970 | 16 | 5 | 31.2500 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6616 | 98.4733 | 98.8506 | 65.3846 | 516 | 8 | 516 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.8484 | 90.3030 | 95.5414 | 87.6863 | 149 | 16 | 150 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.0971 | 95.6607 | 98.5772 | 82.2319 | 485 | 22 | 485 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7861 | 99.6723 | 99.9000 | 60.2486 | 6996 | 23 | 6996 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4116 | 99.0616 | 99.7639 | 37.2813 | 4645 | 44 | 4649 | 11 | 5 | 45.4545 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7235 | 99.9335 | 62.1365 | 9018 | 25 | 9018 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.8316 | 99.7287 | 99.9347 | 64.6441 | 9189 | 25 | 9189 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.8332 | 99.7312 | 99.9354 | 64.6456 | 9277 | 25 | 9277 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7864 | 99.6587 | 99.9145 | 66.8895 | 5840 | 20 | 5840 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7920 | 99.6676 | 99.9167 | 69.5036 | 5997 | 20 | 5997 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7940 | 99.6707 | 99.9175 | 69.5482 | 6054 | 20 | 6054 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | het | 98.6520 | 97.8192 | 99.4991 | 79.4500 | 2781 | 62 | 2781 | 14 | 5 | 35.7143 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | het | 98.0159 | 96.7543 | 99.3107 | 87.0375 | 1729 | 58 | 1729 | 12 | 5 | 41.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | het | 98.0955 | 96.9072 | 99.3133 | 87.4569 | 1880 | 60 | 1880 | 13 | 5 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | het | 98.1200 | 96.9466 | 99.3222 | 87.5276 | 1905 | 60 | 1905 | 13 | 5 | 38.4615 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |