PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
2251-2300 / 86044 show all
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.4681
90.2214
92.7497
68.5930
90889858942699645
92.2747
gduggal-snapfbINDELI6_15*homalt
78.8948
72.1430
87.0410
39.6459
450117384480667645
96.7016
anovak-vgSNP*map_l250_m2_e1het
71.9604
86.4932
61.6087
92.1600
455371145192816645
22.9048
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
54.4770
39.2554
88.9798
82.4941
605293656088754644
85.4111
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
84.3407
95.6876
75.3996
74.3623
298001343300929818643
6.5492
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
84.3407
95.6876
75.3996
74.3623
298001343300929818643
6.5492
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.8549
24.7113
59.1245
71.3782
9632934959663642
96.8326
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.9824
96.8153
97.1501
58.2231
2736090027373803642
79.9502
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
anovak-vgSNP*map_l250_m2_e0het
71.8617
86.4074
61.5077
92.1188
448870644552788641
22.9914
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.2721
93.5191
89.1304
80.4771
10101700105781290640
49.6124
anovak-vgINDEL*map_l100_m2_e0*
72.4393
72.7593
72.1222
84.8313
2687100627631068640
59.9251
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2994
98.2297
92.5388
63.5670
82121488223663640
96.5309
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2994
98.2297
92.5388
63.5670
82121488223663640
96.5309
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8782
93.0607
96.7682
51.4476
20706154421469717639
89.1213
eyeh-varpipeINDELI16_PLUS**
50.2841
36.9610
78.6262
37.5078
235740202358641639
99.6880
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3750
99.4887
95.3492
61.3437
163458416381799639
79.9750
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
43.4211
35.2336
56.5657
54.1348
113120791120860639
74.3023
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
52.0817
37.5305
85.0613
64.9709
431071744299755639
84.6358
ciseli-customSNPtvmap_l100_m2_e1homalt
89.1763
87.8306
90.5639
64.9644
817011328158850639
75.1765
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
94.1010
95.3685
92.8667
39.9701
99254829699745638
85.6376
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.2141
84.4066
94.6024
34.3983
500792511480655637
97.2519
gduggal-snapfbINDELI6_15HG002compoundhethomalt
3.2572
38.7097
1.7002
37.4879
121911636636
100.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
75.7026
69.8630
82.6075
47.3461
13775943073647636
98.2998
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
75.7026
69.8630
82.6075
47.3461
13775943073647636
98.2998
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.2482
70.2896
96.2549
70.8872
3046012875304561185636
53.6709
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
jpowers-varprowlINDELD1_5*homalt
93.6510
89.4228
98.2990
49.9719
43751517543688756634
83.8624
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.1863
26.6694
37.5453
73.7371
64317689331552633
40.7861
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.3657
89.9732
92.8019
79.8114
906310108999698633
90.6877
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.0608
87.8273
94.5415
37.6092
12107167812020694633
91.2104
ciseli-customSNPtvmap_l100_m2_e0homalt
89.1677
87.8120
90.5658
64.9670
809111238083842633
75.1781
ghariani-varprowlINDELD1_5*homalt
93.4710
89.4248
97.9006
50.1151
43752517443695937631
67.3426
qzeng-customSNP*HG002complexvar*
99.1204
98.4430
99.8072
19.9398
742639117467238431398631
45.1359
qzeng-customSNP*map_l100_m0_e0*
82.6366
72.0228
96.9194
83.3401
23653918823407744630
84.6774
gduggal-snapvardINDEL*map_sirenhet
85.6604
93.9663
78.7036
86.4515
423627249781347630
46.7706
ciseli-customINDEL*map_sirenhet
76.8656
76.7303
77.0013
84.6311
3459104934821040630
60.5769
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.9214
45.2924
60.8234
54.7022
127015341374885630
71.1864
anovak-vgINDEL*map_l100_m1_e0*
72.2354
72.6157
71.8590
84.0163
260498226711046628
60.0382
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
65.1903
73.6735
58.4590
47.5626
3611291396992627
63.2056
qzeng-customSNP*map_l150_m2_e1*
81.4031
70.2204
96.8222
87.0167
22618959222364734626
85.2861
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
84.1988
94.4771
75.9374
66.3688
20871222086661626
94.7050
jlack-gatkINDELI6_15**
96.1308
95.2745
97.0025
53.1865
23650117323656731625
85.4993
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
49.0771
33.9479
88.5320
66.3182
5671110345705739624
84.4384
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
49.0771
33.9479
88.5320
66.3182
5671110345705739624
84.4384
gduggal-snapfbSNP*map_l125_m2_e0*
96.9292
96.9758
96.8828
74.5886
453101413453141458623
42.7298
gduggal-snapfbSNP*map_l125_m2_e1*
96.9532
97.0065
96.9000
74.6410
457891413457931465623
42.5256
mlin-fermikitINDELD16_PLUS**
87.3801
85.9375
88.8720
69.7132
58309545846732623
85.1093