PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22751-22800 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1538 | 98.0392 | 94.3396 | 51.5982 | 100 | 2 | 100 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3136 | 99.0921 | 99.5361 | 73.0198 | 1528 | 14 | 1502 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7813 | 99.6999 | 99.8628 | 43.7307 | 3655 | 11 | 3639 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 96.2312 | 96.7555 | 95.7126 | 83.6954 | 835 | 28 | 826 | 37 | 5 | 13.5135 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 95.8402 | 96.9317 | 94.7730 | 87.3013 | 695 | 22 | 689 | 38 | 5 | 13.1579 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5000 | 95.8716 | 99.1848 | 78.2549 | 418 | 18 | 1095 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3377 | 96.0417 | 98.6692 | 81.4984 | 461 | 19 | 519 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 48.0000 | 100.0000 | 31.5789 | 90.0000 | 1 | 0 | 12 | 26 | 5 | 19.2308 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 32.3529 | 88.3562 | 0 | 0 | 11 | 23 | 5 | 21.7391 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | het | 66.7957 | 57.6923 | 79.3103 | 83.8440 | 45 | 33 | 46 | 12 | 5 | 41.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 57.4870 | 54.9296 | 60.2941 | 93.6685 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 57.4870 | 54.9296 | 60.2941 | 93.7672 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 34.1463 | 29.1667 | 41.1765 | 98.8591 | 7 | 17 | 7 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 46.1032 | 32.2581 | 80.7692 | 87.0647 | 20 | 42 | 21 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 35.8974 | 23.7288 | 73.6842 | 90.0524 | 14 | 45 | 14 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 37.0370 | 24.5902 | 75.0000 | 90.9910 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.6190 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.8505 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9562 | 96.3303 | 97.5904 | 85.6699 | 420 | 16 | 405 | 10 | 5 | 50.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4013 | 96.9970 | 97.8091 | 88.3245 | 646 | 20 | 625 | 14 | 5 | 35.7143 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4013 | 96.9970 | 97.8091 | 88.3245 | 646 | 20 | 625 | 14 | 5 | 35.7143 | |
| ckim-gatk | INDEL | I1_5 | * | hetalt | 95.6301 | 91.6749 | 99.9419 | 60.1212 | 10263 | 932 | 10325 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5100 | 96.3492 | 98.6992 | 65.8143 | 607 | 23 | 607 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 60.8445 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5587 | 100.0000 | 99.1213 | 72.8401 | 564 | 0 | 564 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9664 | 98.7304 | 97.2141 | 87.0980 | 1322 | 17 | 1326 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.0091 | 98.7573 | 97.2721 | 88.0110 | 1351 | 17 | 1355 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0472 | 98.7814 | 97.3239 | 88.0481 | 1378 | 17 | 1382 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_siren | het | 97.9415 | 98.8102 | 97.0879 | 85.2732 | 1661 | 20 | 1667 | 50 | 5 | 10.0000 | |
| ckim-gatk | INDEL | I6_15 | * | hetalt | 95.9700 | 92.3167 | 99.9244 | 35.7056 | 7894 | 657 | 7935 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9984 | 97.5741 | 98.4263 | 73.5027 | 724 | 18 | 688 | 11 | 5 | 45.4545 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.5081 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5563 | 99.1458 | 99.9703 | 67.1493 | 16830 | 145 | 16830 | 5 | 5 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5563 | 99.1458 | 99.9703 | 67.1493 | 16830 | 145 | 16830 | 5 | 5 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7892 | 99.7825 | 99.7959 | 36.4791 | 7339 | 16 | 7335 | 15 | 5 | 33.3333 | |
| ckim-gatk | SNP | * | segdup | het | 98.5246 | 99.5207 | 97.5483 | 94.9213 | 17234 | 83 | 17228 | 433 | 5 | 1.1547 | |
| ckim-gatk | SNP | ti | segdup | het | 98.6041 | 99.5428 | 97.6830 | 94.4043 | 11975 | 55 | 11973 | 284 | 5 | 1.7606 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3703 | 99.3703 | 99.3703 | 89.2862 | 789 | 5 | 789 | 5 | 5 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7843 | 99.6517 | 99.9173 | 61.4911 | 10873 | 38 | 10869 | 9 | 5 | 55.5556 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.8267 | 87.4867 | 98.8609 | 64.0750 | 1650 | 236 | 1649 | 19 | 5 | 26.3158 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 61.4577 | 58.6207 | 64.5833 | 99.8482 | 51 | 36 | 31 | 17 | 5 | 29.4118 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | het | 80.3728 | 67.9401 | 98.3749 | 89.2349 | 907 | 428 | 908 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | het | 80.7469 | 68.4400 | 98.4504 | 89.8946 | 952 | 439 | 953 | 15 | 5 | 33.3333 | |