PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22451-22500 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 37.5000 | 99.1091 | 0 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | * | hetalt | 99.5989 | 99.7704 | 99.4279 | 53.2620 | 869 | 2 | 869 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0773 | 99.6780 | 96.5272 | 70.4668 | 2167 | 7 | 2168 | 78 | 5 | 6.4103 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2251 | 99.7837 | 94.7945 | 71.8473 | 1384 | 3 | 1384 | 76 | 5 | 6.5790 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.5760 | 87.0968 | 68.3230 | 91.5441 | 108 | 16 | 110 | 51 | 5 | 9.8039 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.5025 | 96.2525 | 98.7854 | 87.2812 | 488 | 19 | 488 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1176 | 98.5286 | 99.7136 | 61.8611 | 1741 | 26 | 1741 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6007 | 99.4924 | 99.7093 | 41.1337 | 2744 | 14 | 2744 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | homalt | 99.4020 | 98.9863 | 99.8211 | 73.3556 | 3906 | 40 | 3906 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | homalt | 99.4097 | 98.9958 | 99.8271 | 75.2959 | 4042 | 41 | 4042 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | homalt | 99.4171 | 99.0082 | 99.8293 | 75.3205 | 4093 | 41 | 4093 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | het | 96.0492 | 95.6294 | 96.4727 | 93.2955 | 547 | 25 | 547 | 20 | 5 | 25.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 76.9385 | 62.9306 | 98.9682 | 67.0678 | 2302 | 1356 | 2302 | 24 | 5 | 20.8333 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.3513 | 68.8197 | 99.4627 | 55.6845 | 1481 | 671 | 1481 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.9139 | 46.2662 | 98.2759 | 80.8707 | 285 | 331 | 285 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.6541 | 71.2598 | 95.5986 | 79.6197 | 543 | 219 | 543 | 25 | 5 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 61.6145 | 48.5714 | 84.2342 | 85.1703 | 187 | 198 | 187 | 35 | 5 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.0867 | 68.5777 | 99.1772 | 58.7467 | 1567 | 718 | 1567 | 13 | 5 | 38.4615 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | het | 84.9116 | 74.6019 | 98.5279 | 92.8459 | 937 | 319 | 937 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | * | 77.1296 | 68.0000 | 89.0909 | 85.2151 | 17 | 8 | 49 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | * | 78.9185 | 70.3704 | 89.8305 | 86.2471 | 19 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | homalt | 99.7810 | 99.7318 | 99.8302 | 73.0404 | 6694 | 18 | 6469 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | SNP | * | map_siren | hetalt | 98.9320 | 98.7654 | 99.0991 | 70.0162 | 80 | 1 | 550 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7046 | 99.9754 | 99.4352 | 43.5229 | 4064 | 1 | 4049 | 23 | 5 | 21.7391 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | homalt | 99.8623 | 99.8226 | 99.9020 | 73.1001 | 7314 | 13 | 7136 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | homalt | 99.8676 | 99.8293 | 99.9058 | 75.1080 | 7603 | 13 | 7426 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | homalt | 99.8689 | 99.8310 | 99.9067 | 75.1753 | 7680 | 13 | 7499 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.2616 | 85.6061 | 93.2432 | 87.4150 | 113 | 19 | 69 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 72.0000 | 62.7907 | 84.3750 | 80.1242 | 27 | 16 | 27 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.9907 | 61.6646 | 98.9879 | 43.7998 | 489 | 304 | 489 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | het | 60.5561 | 44.2105 | 96.0784 | 72.5561 | 294 | 371 | 294 | 12 | 5 | 41.6667 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 70.6542 | 55.4252 | 97.4227 | 64.6630 | 189 | 152 | 189 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 70.3704 | 55.0000 | 97.6636 | 65.3160 | 209 | 171 | 209 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.6774 | 71.3873 | 90.1460 | 83.5435 | 247 | 99 | 247 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.0972 | 48.9985 | 96.9512 | 78.2925 | 318 | 331 | 318 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.5688 | 48.5114 | 96.5157 | 77.0400 | 277 | 294 | 277 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | het | 88.1317 | 79.2980 | 99.1803 | 89.9363 | 1333 | 348 | 1331 | 11 | 5 | 45.4545 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | het | 93.3578 | 88.8476 | 98.3505 | 97.1410 | 478 | 60 | 477 | 8 | 5 | 62.5000 | |