PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22351-22400 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 86.6885 | 80.3324 | 94.1368 | 55.4427 | 290 | 71 | 289 | 18 | 5 | 27.7778 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | * | 50.6599 | 36.0825 | 85.0000 | 88.3721 | 35 | 62 | 34 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | homalt | 82.9069 | 73.6486 | 94.8276 | 89.1386 | 109 | 39 | 110 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | homalt | 85.0123 | 75.8772 | 96.6480 | 88.9370 | 173 | 55 | 173 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | * | 79.0123 | 74.4186 | 84.2105 | 49.3333 | 32 | 11 | 32 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | het | 81.3559 | 82.7586 | 80.0000 | 46.4286 | 24 | 5 | 24 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | homalt | 96.0632 | 92.4747 | 99.9414 | 32.6716 | 12436 | 1012 | 11931 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | het | 92.3077 | 96.8750 | 88.1517 | 92.7937 | 186 | 6 | 186 | 25 | 5 | 20.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | * | 90.8072 | 93.7500 | 88.0435 | 93.4682 | 165 | 11 | 162 | 22 | 5 | 22.7273 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | * | 87.4195 | 92.4528 | 82.9060 | 96.3265 | 98 | 8 | 97 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | * | 88.1641 | 92.9204 | 83.8710 | 96.6505 | 105 | 8 | 104 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | * | 88.2633 | 92.9825 | 84.0000 | 96.7235 | 106 | 8 | 105 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6353 | 95.7094 | 99.6403 | 58.7026 | 1673 | 75 | 1662 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.1859 | 87.8023 | 99.2727 | 79.4623 | 835 | 116 | 819 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | homalt | 97.3310 | 95.8665 | 98.8411 | 92.8933 | 603 | 26 | 597 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.6782 | 97.9861 | 97.3722 | 73.2523 | 1411 | 29 | 1371 | 37 | 5 | 13.5135 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0137 | 98.0306 | 96.0177 | 76.2105 | 896 | 18 | 868 | 36 | 5 | 13.8889 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | * | 83.6982 | 96.2092 | 74.0666 | 94.7166 | 736 | 29 | 734 | 257 | 5 | 1.9455 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | hetalt | 60.3494 | 49.1935 | 78.0488 | 93.0034 | 61 | 63 | 32 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0905 | 95.4023 | 94.7808 | 71.1793 | 415 | 20 | 454 | 25 | 5 | 20.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6328 | 98.1185 | 99.1525 | 79.5691 | 1043 | 20 | 1053 | 9 | 5 | 55.5556 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 86.1756 | 76.2974 | 98.9919 | 34.4782 | 985 | 306 | 491 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.6440 | 90.0688 | 99.7088 | 29.5734 | 6149 | 678 | 1712 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.6234 | 85.8268 | 91.6084 | 71.3427 | 109 | 18 | 131 | 12 | 5 | 41.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1004 | 99.3228 | 98.8789 | 34.2183 | 440 | 3 | 441 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | * | 92.5116 | 88.2122 | 97.2516 | 82.2846 | 449 | 60 | 460 | 13 | 5 | 38.4615 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.1250 | 38.2022 | 87.1795 | 62.1359 | 34 | 55 | 34 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 41.8118 | 28.3019 | 80.0000 | 60.9375 | 15 | 38 | 20 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 52.0278 | 40.2098 | 73.6842 | 72.8571 | 115 | 171 | 14 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.0000 | 59.0909 | 72.2222 | 68.4211 | 13 | 9 | 13 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 49.6165 | 35.4286 | 82.7586 | 60.8108 | 62 | 113 | 24 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.1822 | 76.1905 | 84.6154 | 73.4694 | 64 | 20 | 33 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | * | 97.5776 | 96.4152 | 98.7683 | 82.4696 | 1291 | 48 | 1283 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | * | 97.6023 | 96.4158 | 98.8183 | 83.9763 | 1345 | 50 | 1338 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.5882 | 66.6667 | 75.0000 | 62.9630 | 16 | 8 | 15 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | * | hetalt | 99.5989 | 99.7704 | 99.4279 | 53.2620 | 869 | 2 | 869 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | homalt | 98.9560 | 98.1324 | 99.7936 | 88.2570 | 2417 | 46 | 2417 | 5 | 5 | 100.0000 | |