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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
22001-22050 / 86044 show all
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6785
97.8849
99.4850
27.6398
115725115966
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
97.3783
98.4848
96.2963
75.6574
3255312126
50.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.2401
95.3342
99.2238
23.4653
7563776766
100.0000
ckim-vqsrINDELI16_PLUS*hetalt
95.6650
91.9924
99.6430
54.9403
1930168195476
85.7143
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
91.9540
97.5610
86.9565
88.1748
4014066
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2798
99.1742
99.3856
72.8070
132111129486
75.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5099
97.8184
99.2114
76.2576
1928431887156
40.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.8889
100.0000
80.0000
79.4521
2402466
100.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5099
97.8184
99.2114
76.2576
1928431887156
40.0000
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5376
99.1089
99.9700
56.4901
200191802001966
100.0000
ckim-vqsrSNP*map_l125_m2_e0*
70.4819
54.7482
98.9056
88.7400
2558021143255772836
2.1201
ckim-vqsrSNP*map_l125_m2_e1*
70.6297
54.9235
98.9163
88.7326
2592521277259222846
2.1127
ckim-vqsrSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5068
99.4678
99.5459
59.1769
177569517755816
7.4074
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3045
99.1512
99.4582
87.3902
128511128576
85.7143
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2958
99.4125
99.1794
88.4605
846584676
85.7143
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.6943
72.8549
98.3229
36.6534
46717446986
75.0000
ckim-isaacSNP*map_l100_m0_e0het
77.3393
63.1643
99.7172
71.7888
13394781113397386
15.7895
ckim-isaacSNP*map_l125_m2_e1homalt
67.3574
50.7985
99.9327
65.6358
89068626890666
100.0000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1838
92.7372
95.6762
65.3122
18771471903866
6.9767
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1004
91.1765
99.3772
49.3237
1116108111776
85.7143
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6063
94.2548
99.0780
47.3389
27891702794266
23.0769
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.0776
92.7182
99.6894
66.0081
2241176224776
85.7143
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50het
97.5990
96.0558
99.1926
35.3810
64782666511536
11.3208
ckim-isaacSNPtimap_l100_m0_e0*
75.5708
60.8148
99.7815
66.9687
13240853113241296
20.6897
ckim-isaacSNPtimap_sirenhet
88.1134
78.8433
99.8538
52.2793
491841319849191726
8.3333
ckim-isaacSNPtimap_sirenhomalt
82.7288
70.5560
99.9776
44.7961
26752111642675366
100.0000
ckim-isaacSNPtvmap_l150_m1_e0het
71.1670
55.3988
99.4831
79.3620
384830983849206
30.0000
ckim-isaacSNPtvmap_l150_m2_e0het
71.5812
55.9018
99.4848
80.5969
405431984055216
28.5714
ckim-isaacSNPtvmap_l150_m2_e1het
71.6314
55.9608
99.4920
80.5897
411232364113216
28.5714
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.1896
94.7427
99.7662
39.0209
2541141256066
100.0000
ckim-vqsrINDEL*map_l150_m1_e0*
96.2213
96.0389
96.4045
93.0291
1285531287486
12.5000
ckim-vqsrINDEL*map_l150_m2_e0*
96.2276
95.9517
96.5050
93.5044
1351571353496
12.2449
ckim-isaacINDELD16_PLUS*homalt
88.9191
81.0875
98.4252
54.0612
13723201375226
27.2727
ckim-isaacINDELD16_PLUSHG002compoundhethomalt
23.5294
25.0000
22.2222
66.6667
26276
85.7143
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
88.4682
80.1441
98.7217
59.1894
10012481004136
46.1538
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
88.4682
80.1441
98.7217
59.1894
10012481004136
46.1538
ckim-isaacINDELD16_PLUSmap_siren*
32.6087
20.9790
73.1707
91.1638
3011330116
54.5455
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
87.1765
82.4324
92.5000
74.6032
61137466
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
94.6735
92.3896
97.0732
71.9306
60750597186
33.3333
ckim-isaacINDELD1_5map_l100_m1_e0het
85.8620
76.3441
98.0912
84.3537
923286925186
33.3333
ckim-isaacINDELD1_5map_l125_m1_e0*
78.8546
65.8088
98.3516
87.2415
716372716126
50.0000
ckim-isaacINDELD1_5map_l125_m2_e0*
79.3734
66.4917
98.4456
87.8826
760383760126
50.0000
ckim-isaacINDELD1_5map_l125_m2_e1*
79.3602
66.4650
98.4635
87.9214
769388769126
50.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.1664
67.4653
98.7589
27.5995
53525855776
85.7143
ckim-isaacINDELD6_15segdup*
90.5970
85.8639
95.8824
90.7053
1642716376
85.7143
ckim-isaacINDELD6_15segduphet
89.7285
86.9565
92.6829
92.5319
80127666
100.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
96.0637
95.9574
96.1702
60.0680
45119452186
33.3333
ckim-isaacINDELI1_5segduphet
97.7612
97.3978
98.1273
94.4800
52414524106
60.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.3354
116319116566
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.6390
96.2169
99.1037
24.2483
7633077476
85.7143