PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
2151-2200 / 86044 show all
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4455
88.5350
53.1777
65.7562
834108820722692
95.8449
gduggal-snapplatSNPtimap_l100_m2_e1*
95.8022
94.4145
97.2313
76.1409
467212764467421331691
51.9159
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7207
98.0134
95.4617
70.0763
1746535417080812691
85.0985
ciseli-customSNPtimap_l150_m2_e0homalt
87.0824
85.6618
88.5509
72.6120
652410926520843689
81.7319
gduggal-snapfbSNP*map_l100_m2_e0*
97.7110
97.8206
97.6017
69.6113
723521612723581778689
38.7514
gduggal-snapfbSNP*map_l100_m2_e1*
97.7287
97.8404
97.6173
69.6430
731231614731291785689
38.5994
gduggal-snapfbSNP*map_l100_m1_e0*
97.6767
97.7805
97.5731
67.6748
707961607708021761688
39.0687
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
gduggal-bwafbINDELI6_15HG002compoundhet*
80.9656
72.6869
91.3725
27.9246
637923977403699688
98.4263
gduggal-snapplatSNPtimap_l100_m2_e0*
95.7724
94.3751
97.2116
76.1299
462072754462281326687
51.8100
ckim-isaacINDELD6_15HG002compoundhet*
87.3304
83.8888
91.0664
22.5432
757614557472733687
93.7244
mlin-fermikitINDELD1_5HG002compoundhethomalt
41.8824
90.7216
27.2257
80.6916
26427263703687
97.7240
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
gduggal-bwaplatINDEL*HG002complexvar*
90.8863
84.3874
98.4697
61.0933
6492612012647991007684
67.9245
gduggal-snapplatSNPtimap_l100_m1_e0*
95.7091
94.2918
97.1698
74.6083
451952736452161317683
51.8603
anovak-vgINDELI1_5HG002complexvarhet
44.4856
30.2381
84.1220
66.7223
55001268962041171683
58.3262
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
25.7821
22.7376
29.7679
52.9440
2991016295696682
97.9885
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
43.9869
88.4848
29.2683
52.5554
29238288696682
97.9885
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
63.8112
58.4543
70.2490
50.9009
161111451608681680
99.8532
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.9346
96.5800
87.7156
44.0577
49421754934691677
97.9740
gduggal-bwaplatINDEL*HG002compoundhet*
80.3779
69.5961
95.1127
70.6361
208519109208431071677
63.2120
jlack-gatkINDELI1_5**
99.0273
98.9407
99.1140
59.6345
14906815961491191333677
50.7877
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
9.0082
7.4513
11.3874
43.3234
88109387677676
99.8523
anovak-vgINDELD6_15HG002complexvar*
72.7472
67.2954
79.1602
52.2024
356817343582943676
71.6861
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
26.8490
23.6502
31.0484
54.2013
3111004308684676
98.8304
gduggal-bwaplatINDELI1_5**
93.7478
88.8514
99.2155
64.5183
133867167971337981058675
63.7996
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
61.2783
55.3295
68.6604
44.0399
204016471963896675
75.3348
ciseli-customSNPtimap_l150_m1_e0homalt
86.8060
85.3282
88.3359
70.2453
625210756248825675
81.8182
cchapple-customSNP**het
99.7822
99.8765
99.6880
23.4490
1871274231318719215859675
11.5207
egarrison-hhgaINDEL*HG002complexvarhet
97.6548
97.3665
97.9448
54.4695
44995121744989944675
71.5042
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
45.3799
89.3939
30.4082
52.3346
29535298682674
98.8270
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
17.9562
55.4054
10.7143
41.9355
826681675674
99.8519
gduggal-snapplatSNPtvHG002complexvar*
97.5342
96.7281
98.3538
26.8142
23810180542384503991673
16.8629
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
86.2959
82.2171
90.8006
44.5699
32046937531763673
88.2045
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.3231
97.9202
94.7773
65.7410
1431330413937768672
87.5000
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7884
98.3155
99.2658
69.8244
928581591106946791672
84.9558
ndellapenna-hhgaINDEL*HG002complexvarhet
97.4850
96.9835
97.9917
54.0711
44818139444840919671
73.0141
gduggal-snapplatSNPtimap_l100_m2_e1het
95.5522
95.3521
95.7532
80.1277
295211439295591311671
51.1823
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
41.0817
36.4955
46.9862
60.8362
6541138647730671
91.9178
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
56.7644
80.9840
43.6963
58.5880
609143610786670
85.2417
gduggal-snapvardINDEL*map_siren*
85.9947
88.0027
84.0764
84.1625
652188973551393670
48.0976
anovak-vgINDELD6_15HG002compoundhethomalt
20.9157
83.3333
11.9586
45.5385
204127935669
71.5508
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
52.1457
98.9446
35.4015
37.2279
3754388708669
94.4915
gduggal-snapplatSNPtimap_l100_m2_e0het
95.5194
95.3171
95.7225
80.1164
291881434292261306667
51.0720
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
79.6213
77.5816
81.7711
43.7436
31639143158704666
94.6023