PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21851-21900 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6558 | 99.1774 | 98.1395 | 88.0655 | 844 | 7 | 844 | 16 | 6 | 37.5000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3289 | 99.5281 | 99.1304 | 78.8666 | 4218 | 20 | 4218 | 37 | 6 | 16.2162 | |
| jli-custom | SNP | ti | map_l100_m0_e0 | homalt | 99.6776 | 99.4340 | 99.9224 | 57.9039 | 7730 | 44 | 7730 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m1_e0 | homalt | 99.7128 | 99.5087 | 99.9178 | 67.3088 | 7291 | 36 | 7291 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | homalt | 99.7105 | 99.5011 | 99.9209 | 69.8737 | 7578 | 38 | 7578 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | homalt | 99.7134 | 99.5060 | 99.9217 | 69.9097 | 7655 | 38 | 7655 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0852 | 99.0155 | 99.1549 | 88.3559 | 1408 | 14 | 1408 | 12 | 6 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9059 | 99.0142 | 98.7978 | 89.1921 | 904 | 9 | 904 | 11 | 6 | 54.5455 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3377 | 99.4935 | 99.1825 | 82.1709 | 4125 | 21 | 4125 | 34 | 6 | 17.6471 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0767 | 99.3951 | 98.7603 | 83.0758 | 2629 | 16 | 2629 | 33 | 6 | 18.1818 | |
| jli-custom | SNP | tv | segdup | * | 99.5673 | 99.7773 | 99.3581 | 90.4270 | 8513 | 19 | 8513 | 55 | 6 | 10.9091 | |
| jli-custom | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.3818 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9531 | 94.2953 | 99.7651 | 38.9579 | 2529 | 153 | 2548 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | * | 95.4196 | 97.8458 | 93.1109 | 92.8522 | 863 | 19 | 865 | 64 | 6 | 9.3750 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | het | 94.3374 | 98.0117 | 90.9287 | 93.7882 | 838 | 17 | 842 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | het | 94.5436 | 98.1236 | 91.2155 | 94.1716 | 889 | 17 | 893 | 86 | 6 | 6.9767 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | het | 94.6384 | 94.2308 | 95.0495 | 73.6292 | 196 | 12 | 192 | 10 | 6 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0169 | 90.5822 | 99.9083 | 29.3644 | 7733 | 804 | 7628 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5354 | 98.1623 | 98.9114 | 65.7432 | 641 | 12 | 636 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6024 | 95.6055 | 99.6844 | 50.8784 | 2850 | 131 | 2843 | 9 | 6 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | het | 97.9634 | 96.2887 | 99.6974 | 60.6999 | 12194 | 470 | 12192 | 37 | 6 | 16.2162 | |
| ltrigg-rtg1 | SNP | * | map_l150_m0_e0 | het | 97.3195 | 95.1134 | 99.6305 | 65.8586 | 7552 | 388 | 7549 | 28 | 6 | 21.4286 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | homalt | 99.6459 | 99.5160 | 99.7760 | 87.2925 | 2673 | 13 | 2673 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | * | 97.6589 | 95.6541 | 99.7497 | 82.8747 | 4380 | 199 | 4383 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | homalt | 99.6047 | 99.5485 | 99.6610 | 87.3743 | 1764 | 8 | 1764 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | * | 98.8720 | 98.0022 | 99.7574 | 65.7671 | 10694 | 218 | 10693 | 26 | 6 | 23.0769 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | * | 98.9030 | 98.0625 | 99.7581 | 68.2059 | 11135 | 220 | 11134 | 27 | 6 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | * | 98.9128 | 98.0786 | 99.7613 | 68.2500 | 11281 | 221 | 11283 | 27 | 6 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | map_siren | het | 99.1688 | 98.8255 | 99.5144 | 50.4058 | 28273 | 336 | 28278 | 138 | 6 | 4.3478 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9622 | 94.5860 | 95.3414 | 70.8976 | 1188 | 68 | 1187 | 58 | 6 | 10.3448 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | * | 97.6394 | 96.3174 | 98.9983 | 79.7338 | 3557 | 136 | 3558 | 36 | 6 | 16.6667 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | * | 97.6390 | 96.3525 | 98.9603 | 79.8456 | 3619 | 137 | 3617 | 38 | 6 | 15.7895 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | * | 91.7281 | 90.0000 | 93.5238 | 96.2656 | 9 | 1 | 982 | 68 | 6 | 8.8235 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3359 | 95.5357 | 99.2053 | 39.4061 | 749 | 35 | 749 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.7178 | 89.7143 | 98.0952 | 43.4470 | 314 | 36 | 309 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.8894 | 87.0445 | 97.3054 | 71.2069 | 645 | 96 | 650 | 18 | 6 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.9430 | 62.9630 | 92.5532 | 76.6169 | 85 | 50 | 87 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5582 | 99.2146 | 99.9041 | 50.2607 | 14654 | 116 | 14581 | 14 | 6 | 42.8571 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9876 | 98.4366 | 99.5448 | 47.2044 | 6611 | 105 | 6561 | 30 | 6 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6211 | 94.4615 | 98.8818 | 35.5967 | 614 | 36 | 619 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9514 | 95.3488 | 98.6087 | 46.3119 | 574 | 28 | 567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.8469 | 95.1945 | 98.5577 | 43.0137 | 416 | 21 | 410 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3872 | 86.4865 | 94.6565 | 71.5217 | 128 | 20 | 124 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1564 | 96.8697 | 99.4778 | 38.9804 | 1145 | 37 | 1143 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |