PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21701-21750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.3698 | 88.6709 | 98.5945 | 70.7743 | 1401 | 179 | 1403 | 20 | 6 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.5771 | 86.4295 | 99.6662 | 81.9053 | 2089 | 328 | 2090 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | map_siren | homalt | 87.4388 | 77.6954 | 99.9762 | 56.7476 | 29459 | 8457 | 29428 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| gduggal-bwaplat | SNP | tv | segdup | het | 98.3560 | 97.8438 | 98.8736 | 96.0991 | 5173 | 114 | 5179 | 59 | 6 | 10.1695 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.6406 | 68.2128 | 98.6056 | 59.6463 | 500 | 233 | 495 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | homalt | 99.3999 | 98.9496 | 99.8542 | 74.6089 | 7536 | 80 | 7536 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | homalt | 99.3993 | 98.9471 | 99.8557 | 74.6736 | 7612 | 81 | 7612 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | segdup | het | 98.5285 | 99.3516 | 97.7189 | 92.3400 | 11952 | 78 | 11952 | 279 | 6 | 2.1505 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8593 | 98.3311 | 99.3931 | 83.7319 | 1473 | 25 | 1474 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6908 | 99.5369 | 99.8452 | 60.6918 | 3869 | 18 | 3869 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | homalt | 99.4877 | 99.1110 | 99.8673 | 71.0512 | 6020 | 54 | 6020 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwafb | SNP | tv | segdup | het | 98.1577 | 99.2623 | 97.0773 | 93.8623 | 5248 | 39 | 5248 | 158 | 6 | 3.7975 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | homalt | 52.6316 | 62.5000 | 45.4545 | 79.2453 | 5 | 3 | 5 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | * | 94.9210 | 94.4444 | 95.4023 | 36.0294 | 170 | 10 | 166 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | het | 91.9355 | 96.6102 | 87.6923 | 50.3817 | 57 | 2 | 57 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | * | 93.1788 | 95.1613 | 91.2773 | 90.7573 | 295 | 15 | 293 | 28 | 6 | 21.4286 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | * | 84.8678 | 83.7209 | 86.0465 | 37.6812 | 36 | 7 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 45.4545 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.5038 | 95.3512 | 99.7559 | 75.0693 | 3733 | 182 | 3678 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7933 | 97.8680 | 97.7188 | 57.0996 | 2387 | 52 | 2356 | 55 | 6 | 10.9091 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.1162 | 97.6582 | 96.5801 | 61.6655 | 1543 | 37 | 1525 | 54 | 6 | 11.1111 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7388 | 98.3871 | 99.0930 | 40.5118 | 3843 | 63 | 3824 | 35 | 6 | 17.1429 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.4421 | 98.3051 | 98.5795 | 46.6205 | 2436 | 42 | 2429 | 35 | 6 | 17.1429 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | homalt | 98.0657 | 96.4868 | 99.6971 | 76.4491 | 2664 | 97 | 2633 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | homalt | 98.2992 | 97.1998 | 99.4238 | 87.2438 | 1562 | 45 | 1553 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e0 | homalt | 98.3503 | 97.2556 | 99.4700 | 88.0085 | 1701 | 48 | 1689 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | homalt | 98.3428 | 97.2348 | 99.4764 | 88.0642 | 1723 | 49 | 1710 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | homalt | 98.7655 | 97.7504 | 99.8019 | 73.3170 | 4041 | 93 | 4031 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | homalt | 95.1935 | 94.0141 | 96.4029 | 91.9583 | 267 | 17 | 268 | 10 | 6 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | het | 90.4453 | 89.4428 | 91.4706 | 88.9359 | 305 | 36 | 311 | 29 | 6 | 20.6897 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | * | 91.2711 | 90.0302 | 92.5466 | 95.8100 | 298 | 33 | 298 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | * | 91.3242 | 90.0901 | 92.5926 | 95.8878 | 300 | 33 | 300 | 24 | 6 | 25.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 81.2500 | 81.2500 | 81.2500 | 95.3148 | 26 | 6 | 26 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 86.9565 | 100.0000 | 76.9231 | 95.7096 | 20 | 0 | 20 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | het | 90.3226 | 94.9153 | 86.1538 | 58.3333 | 56 | 3 | 56 | 9 | 6 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 95.0715 | 96.4516 | 93.7304 | 91.7974 | 299 | 11 | 299 | 20 | 6 | 30.0000 | |