PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
2101-2150 / 86044 show all
gduggal-bwafbINDELD1_5HG002compoundhet*
91.0728
88.7045
93.5709
64.7882
10853138211658801716
89.3883
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.3405
95.3885
93.3153
37.1067
637130812759914716
78.3370
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
89.5893
84.9685
94.7416
48.7318
7145126413711761716
94.0867
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.7663
68.9189
12.2249
46.1133
10246100718715
99.5822
gduggal-snapplatSNP*HG002compoundhet*
83.9950
90.1789
78.6048
56.2142
232862536233816364715
11.2351
ciseli-customSNPtiHG002compoundhet*
76.3715
85.1127
69.2586
41.8951
148762602149286626715
10.7908
qzeng-customSNP*map_l125_m2_e1*
83.9768
73.7003
97.5835
83.0865
347881241434406852714
83.8028
ciseli-customSNPtvmap_l100_m2_e0*
83.0120
79.3073
87.0798
73.4407
198535180198422944713
24.2188
qzeng-customSNP*map_l125_m2_e0*
83.8659
73.5398
97.5657
83.0916
343601236333987848710
83.7264
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.0284
97.0399
97.0169
59.6380
31045947336611035709
68.5024
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
83.4657
81.8519
85.1445
71.6183
41909294184730709
97.1233
jpowers-varprowlSNPtiHG002complexvarhomalt
99.7216
99.9488
99.4954
19.7390
19336499193412981709
72.2732
ciseli-customSNP*map_l125_m0_e0homalt
85.9540
85.1609
86.7620
68.6495
57169965702870708
81.3793
egarrison-hhgaINDEL*HG002compoundhethomalt
61.2199
97.0845
44.7051
74.4521
66620667825708
85.8182
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.5482
82.0297
77.2125
65.3284
33147262914860707
82.2093
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
95.7239
96.8194
94.6529
42.8294
1007633116976959707
73.7226
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.4578
77.0718
28.3552
59.9110
27983281710706
99.4366
qzeng-customINDELD1_5HG002compoundhethet
92.9212
93.9236
91.9400
64.3165
162310511042968705
72.8306
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.0738
98.6992
95.5010
61.0266
1555520515517731705
96.4432
ghariani-varprowlSNPtiHG002complexvarhomalt
99.7133
99.9473
99.4805
19.5938
1933591021934051010705
69.8020
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.9840
84.8017
85.1670
81.2419
43417784335755704
93.2450
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
88.6540
89.8499
87.4895
45.7726
849896093431336702
52.5449
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.9829
82.3708
94.4157
36.4127
5691121812224723701
96.9571
qzeng-customSNP*map_l125_m1_e0*
83.4865
72.9742
97.5374
82.2302
330771225032716826701
84.8668
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.4986
91.8437
95.2143
47.2808
1020290616374823701
85.1762
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.2663
94.0755
92.4709
53.9758
95756039543777701
90.2188
ciseli-customSNPtvmap_l100_m1_e0*
82.8010
79.0049
86.9802
71.6783
193575144193472896701
24.2058
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0845
29.5144
35.1449
62.1659
389929388716700
97.7654
gduggal-bwaplatSNPtiHG002complexvar*
97.9838
97.0464
98.9394
19.5056
493419150174937545293700
13.2250
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
11.0979
9.3988
13.5468
44.1924
1111070110702699
99.5726
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
22.0217
71.6216
13.0112
43.9194
10642105702699
99.5726
ciseli-customSNPtimap_l150_m2_e1homalt
87.0667
85.6493
88.5319
72.6293
658911046585853699
81.9461
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5617
98.6804
88.9479
75.7364
16751224167562082698
33.5255
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.5617
98.6804
88.9479
75.7364
16751224167562082698
33.5255
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.0199
83.7017
29.8625
62.4216
30359304714698
97.7591
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.1017
89.1985
95.2002
47.3849
13188159714241718698
97.2145
gduggal-bwafbINDELD1_5*homalt
98.9426
99.3562
98.5324
61.7935
4861131548609724697
96.2707
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
ciseli-customSNPtimap_l100_m0_e0homalt
88.5269
88.0499
89.0090
60.4888
68459296835844695
82.3460
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
95.1353
97.1012
93.2475
55.2934
1078632211006797695
87.2020
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.0836
24.4547
56.2198
65.7568
9532944931725695
95.8621
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.4822
58.5761
69.2853
62.7923
213115072249997694
69.6088
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
56.1509
52.5940
60.2239
47.9612
110599616141066694
65.1032
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
92.4964
96.7963
88.5622
52.1231
54991825482708693
97.8814
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.7995
27.2556
44.4783
55.2641
5801548584729693
95.0617
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.5231
98.6023
94.5298
62.0425
1234617512304712693
97.3315
gduggal-snapfbINDELD1_5HG002complexvar*
94.7329
94.4337
95.0340
57.1180
308941821314231642692
42.1437
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
50.9329
44.5458
59.4580
50.1890
107413371097748692
92.5134