PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20601-20650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.8856 | 69.5341 | 96.6667 | 66.1290 | 194 | 85 | 203 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1732 | 97.8142 | 98.5348 | 74.0741 | 537 | 12 | 538 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 53.3029 | 36.7089 | 97.2763 | 43.3921 | 232 | 400 | 250 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 32.8502 | 62.9630 | 22.2222 | 78.5714 | 17 | 10 | 2 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 80.7772 | 68.1698 | 99.1060 | 43.0545 | 771 | 360 | 776 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 39.0244 | 32.0000 | 50.0000 | 68.0000 | 8 | 17 | 8 | 8 | 7 | 87.5000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.0706 | 76.0870 | 89.0756 | 91.1787 | 210 | 66 | 212 | 26 | 7 | 26.9231 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 89.1561 | 84.4122 | 94.4649 | 85.8278 | 1278 | 236 | 1280 | 75 | 7 | 9.3333 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.4595 | 73.3333 | 50.0000 | 96.4630 | 11 | 4 | 11 | 11 | 7 | 63.6364 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2999 | 97.0961 | 99.5339 | 37.5098 | 11101 | 332 | 11105 | 52 | 7 | 13.4615 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | het | 61.0167 | 44.2242 | 98.3680 | 59.8543 | 8078 | 10188 | 8077 | 134 | 7 | 5.2239 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | het | 62.0977 | 45.3857 | 98.2903 | 64.2784 | 8567 | 10309 | 8566 | 149 | 7 | 4.6980 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | het | 62.3819 | 45.6908 | 98.2867 | 64.4551 | 8721 | 10366 | 8720 | 152 | 7 | 4.6053 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | het | 79.1035 | 82.7586 | 75.7576 | 50.7463 | 24 | 5 | 25 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | * | 57.8534 | 59.0909 | 56.6667 | 94.8980 | 13 | 9 | 17 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | homalt | 57.7796 | 43.0769 | 87.7193 | 72.0588 | 56 | 74 | 50 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.0539 | 11.9565 | 36.8421 | 58.6957 | 11 | 81 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.3038 | 55.5556 | 36.8421 | 58.6957 | 5 | 4 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.8366 | 96.6865 | 83.8931 | 79.2152 | 2597 | 89 | 2573 | 494 | 7 | 1.4170 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4705 | 97.6021 | 99.3545 | 52.3611 | 2198 | 54 | 2155 | 14 | 7 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8156 | 98.5801 | 99.0522 | 46.3316 | 6179 | 89 | 6166 | 59 | 7 | 11.8644 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7542 | 70.2970 | 21.3514 | 93.1022 | 71 | 30 | 79 | 291 | 7 | 2.4055 | |
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | homalt | 96.4416 | 93.6528 | 99.4016 | 87.2532 | 1505 | 102 | 1495 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | homalt | 96.5862 | 93.8822 | 99.4505 | 88.0158 | 1642 | 107 | 1629 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e1 | homalt | 96.5718 | 93.8488 | 99.4575 | 88.0802 | 1663 | 109 | 1650 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 34.3511 | 75.0000 | 22.2772 | 90.2651 | 93 | 31 | 90 | 314 | 7 | 2.2293 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.3092 | 94.0011 | 98.7334 | 63.5924 | 1661 | 106 | 1637 | 21 | 7 | 33.3333 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2056 | 96.5856 | 93.8645 | 49.5961 | 2065 | 73 | 2050 | 134 | 7 | 5.2239 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | homalt | 97.7892 | 95.8854 | 99.7701 | 73.2819 | 3915 | 168 | 3906 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | homalt | 97.7665 | 95.8394 | 99.7728 | 73.2888 | 3962 | 172 | 3952 | 9 | 7 | 77.7778 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7170 | 2.5381 | 33.3333 | 92.1875 | 5 | 192 | 5 | 10 | 7 | 70.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | homalt | 88.9159 | 82.0205 | 97.0771 | 85.2746 | 958 | 210 | 1096 | 33 | 7 | 21.2121 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 38.1468 | 23.7733 | 96.4789 | 45.0677 | 281 | 901 | 274 | 10 | 7 | 70.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 43.3030 | 29.1607 | 84.0796 | 50.0000 | 205 | 498 | 169 | 32 | 7 | 21.8750 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 57.8898 | 44.1696 | 83.9744 | 90.0574 | 125 | 158 | 131 | 25 | 7 | 28.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 62.5395 | 49.1632 | 85.9155 | 86.2802 | 235 | 243 | 244 | 40 | 7 | 17.5000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.5093 | 87.1670 | 98.5493 | 64.5442 | 1963 | 289 | 1970 | 29 | 7 | 24.1379 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |