PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20551-20600 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | * | homalt | 99.1477 | 98.4508 | 99.8545 | 42.0407 | 6228 | 98 | 6177 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | homalt | 84.6862 | 95.8333 | 75.8621 | 56.0606 | 23 | 1 | 22 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6703 | 97.6102 | 99.7536 | 44.9684 | 3676 | 90 | 3644 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5007 | 97.2896 | 99.7423 | 37.1878 | 2728 | 76 | 2709 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6736 | 97.5987 | 99.7724 | 40.0818 | 3089 | 76 | 3068 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6703 | 97.6102 | 99.7536 | 44.9684 | 3676 | 90 | 3644 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | * | het | 93.4104 | 88.2634 | 99.1949 | 47.8107 | 2399 | 319 | 2341 | 19 | 7 | 36.8421 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | het | 69.4745 | 61.7021 | 79.4872 | 79.6875 | 29 | 18 | 31 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 78.1089 | 82.6087 | 74.0741 | 77.3109 | 19 | 4 | 20 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6802 | 96.8254 | 96.5354 | 62.6690 | 610 | 20 | 613 | 22 | 7 | 31.8182 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0806 | 98.7622 | 99.4012 | 57.1167 | 1117 | 14 | 1162 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.4334 | 97.3461 | 99.5452 | 51.1660 | 1724 | 47 | 1751 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1654 | 99.5545 | 98.7794 | 37.2444 | 18102 | 81 | 18127 | 224 | 7 | 3.1250 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | homalt | 99.7245 | 99.5210 | 99.9288 | 67.8086 | 11219 | 54 | 11221 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | homalt | 99.7345 | 99.5384 | 99.9314 | 70.4233 | 11645 | 54 | 11647 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | homalt | 99.7374 | 99.5434 | 99.9321 | 70.4609 | 11773 | 54 | 11779 | 8 | 7 | 87.5000 | |
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3109 | 99.1991 | 99.4230 | 66.8389 | 1734 | 14 | 1723 | 10 | 7 | 70.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5278 | 99.3248 | 97.7435 | 64.5151 | 4266 | 29 | 4245 | 98 | 7 | 7.1429 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2303 | 99.2299 | 99.2308 | 68.4878 | 1675 | 13 | 1677 | 13 | 7 | 53.8462 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.4623 | 92.1212 | 85.0829 | 92.3011 | 152 | 13 | 154 | 27 | 7 | 25.9259 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5189 | 99.8302 | 99.2095 | 64.3231 | 1764 | 3 | 1757 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6831 | 99.5234 | 99.8433 | 60.8736 | 10859 | 52 | 10830 | 17 | 7 | 41.1765 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7805 | 99.7685 | 99.7926 | 58.3234 | 3878 | 9 | 3850 | 8 | 7 | 87.5000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | homalt | 75.0174 | 60.5140 | 98.6641 | 89.2181 | 518 | 338 | 517 | 7 | 7 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2925 | 95.9395 | 98.6842 | 76.0063 | 1205 | 51 | 1200 | 16 | 7 | 43.7500 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4334 | 99.0346 | 99.8354 | 46.3028 | 6668 | 65 | 6670 | 11 | 7 | 63.6364 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.8820 | 73.9003 | 96.9811 | 55.3120 | 252 | 89 | 257 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.5480 | 74.7368 | 97.3244 | 58.8721 | 284 | 96 | 291 | 8 | 7 | 87.5000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.9542 | 96.7192 | 97.1903 | 68.5416 | 737 | 25 | 761 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7555 | 98.8327 | 98.6784 | 75.6101 | 1524 | 18 | 1568 | 21 | 7 | 33.3333 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4721 | 99.4737 | 99.4705 | 36.2584 | 1323 | 7 | 1315 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.3339 | 98.0903 | 96.5891 | 65.8188 | 565 | 11 | 623 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7499 | 98.0301 | 97.4713 | 60.6157 | 846 | 17 | 848 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9185 | 72.5490 | 84.1463 | 86.5132 | 37 | 14 | 69 | 13 | 7 | 53.8462 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.7398 | 88.1890 | 93.4426 | 69.3467 | 112 | 15 | 114 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5612 | 96.1290 | 95.0000 | 81.4600 | 149 | 6 | 152 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | * | 51.0018 | 42.5532 | 63.6364 | 88.1295 | 20 | 27 | 21 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 72.1094 | 57.6923 | 96.1326 | 57.6112 | 165 | 121 | 174 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2745 | 100.0000 | 75.8621 | 83.7079 | 22 | 0 | 22 | 7 | 7 | 100.0000 | |