PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20051-20100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | map_l125_m1_e0 | * | 77.9687 | 64.4993 | 98.5486 | 87.4682 | 1359 | 748 | 1358 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | * | 78.3417 | 64.9818 | 98.6169 | 88.3010 | 1427 | 769 | 1426 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4329 | 96.3492 | 98.5413 | 62.2630 | 607 | 23 | 608 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9760 | 98.3446 | 99.6155 | 65.8661 | 2614 | 44 | 2591 | 10 | 8 | 80.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5366 | 96.6538 | 96.4198 | 83.9921 | 751 | 26 | 781 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5400 | 96.5952 | 96.4848 | 85.2941 | 766 | 27 | 796 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 96.6133 | 96.6667 | 96.5599 | 85.3595 | 783 | 27 | 814 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8610 | 91.4980 | 98.4807 | 64.9564 | 226 | 21 | 713 | 11 | 8 | 72.7273 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.0874 | 100.0000 | 94.3396 | 74.8418 | 153 | 0 | 150 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0504 | 96.7449 | 99.3916 | 61.8066 | 1278 | 43 | 1307 | 8 | 8 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6397 | 99.6465 | 99.6329 | 33.8966 | 7329 | 26 | 7327 | 27 | 8 | 29.6296 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5568 | 99.6967 | 99.4174 | 37.3360 | 4602 | 14 | 4607 | 27 | 8 | 29.6296 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | * | 94.5681 | 94.5098 | 94.6265 | 93.8008 | 723 | 42 | 722 | 41 | 8 | 19.5122 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | homalt | 59.4286 | 47.7064 | 78.7879 | 96.7977 | 52 | 57 | 52 | 14 | 8 | 57.1429 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 29.6296 | 96.2238 | 0 | 0 | 8 | 19 | 8 | 42.1053 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 29.1667 | 95.9184 | 0 | 0 | 7 | 17 | 8 | 47.0588 | |
| ckim-dragen | SNP | tv | HG002compoundhet | * | 99.7984 | 99.7422 | 99.8546 | 49.3913 | 8900 | 23 | 8925 | 13 | 8 | 61.5385 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3735 | 99.2041 | 99.5436 | 81.7204 | 4113 | 33 | 4144 | 19 | 8 | 42.1053 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7426 | 99.6705 | 99.8147 | 66.5588 | 4840 | 16 | 4849 | 9 | 8 | 88.8889 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | het | 97.0162 | 97.7840 | 96.2604 | 84.6993 | 2780 | 63 | 2780 | 108 | 8 | 7.4074 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7955 | 94.3933 | 99.3232 | 30.5115 | 1128 | 67 | 1174 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.8969 | 94.3465 | 99.5891 | 25.8850 | 1819 | 109 | 1939 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.7052 | 90.8178 | 98.9404 | 37.4482 | 633 | 64 | 747 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4462 | 99.3902 | 91.8033 | 88.0275 | 163 | 1 | 112 | 10 | 8 | 80.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.3918 | 87.9802 | 99.5128 | 30.5121 | 1603 | 219 | 1634 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7099 | 99.7915 | 99.6285 | 54.4538 | 6702 | 14 | 6704 | 25 | 8 | 32.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 96.9768 | 98.8095 | 95.2108 | 87.6725 | 1826 | 22 | 1829 | 92 | 8 | 8.6957 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0041 | 98.7467 | 95.3219 | 88.2074 | 1891 | 24 | 1895 | 93 | 8 | 8.6022 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 97.0144 | 98.7107 | 95.3754 | 88.2617 | 1914 | 25 | 1918 | 93 | 8 | 8.6022 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4526 | 86.3337 | 99.5050 | 31.4964 | 1573 | 249 | 1608 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.9551 | 95.5466 | 98.4058 | 74.9000 | 708 | 33 | 679 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5997 | 84.4444 | 91.0000 | 79.0356 | 114 | 21 | 91 | 9 | 8 | 88.8889 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | * | 98.6149 | 97.9374 | 99.3018 | 67.0164 | 1282 | 27 | 1280 | 9 | 8 | 88.8889 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.8644 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4441 | 94.9275 | 98.0100 | 72.9839 | 393 | 21 | 394 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 90.3631 | 61 | 0 | 61 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8998 | 98.4501 | 99.3536 | 73.4648 | 1588 | 25 | 1537 | 10 | 8 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | * | 97.1890 | 96.8633 | 97.5169 | 84.0762 | 1297 | 42 | 1296 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | * | 97.2488 | 96.9298 | 97.5700 | 85.3664 | 1326 | 42 | 1325 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3023 | 96.9892 | 97.6173 | 85.4425 | 1353 | 42 | 1352 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_siren | het | 97.4161 | 97.5610 | 97.2716 | 82.6203 | 1640 | 41 | 1640 | 46 | 8 | 17.3913 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | * | HG002compoundhet | het | 99.7322 | 99.6967 | 99.7677 | 46.4046 | 14135 | 43 | 14173 | 33 | 8 | 24.2424 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7896 | 99.8368 | 99.7424 | 34.4616 | 7343 | 12 | 7358 | 19 | 8 | 42.1053 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | homalt | 98.8142 | 99.3641 | 98.2704 | 89.0250 | 625 | 4 | 625 | 11 | 8 | 72.7273 | |