PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19951-20000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | * | hetalt | 85.7294 | 75.3098 | 99.4953 | 51.3953 | 1580 | 518 | 1577 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 87.4862 | 79.2271 | 97.6676 | 67.3333 | 328 | 86 | 335 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.7725 | 95.8037 | 99.8239 | 42.4645 | 4452 | 195 | 4535 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.1325 | 96.5309 | 99.7881 | 46.4918 | 3673 | 132 | 3767 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 62.0650 | 56.1404 | 69.3878 | 99.4106 | 32 | 25 | 34 | 15 | 8 | 53.3333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 77.7778 | 74.4681 | 81.3953 | 92.8453 | 35 | 12 | 35 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 82.5397 | 89.6552 | 76.4706 | 93.3071 | 26 | 3 | 26 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3222 | 99.1249 | 99.5202 | 58.6425 | 10987 | 97 | 10994 | 53 | 8 | 15.0943 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.6965 | 89.5833 | 83.9898 | 89.6733 | 645 | 75 | 661 | 126 | 8 | 6.3492 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5827 | 98.8772 | 98.2900 | 65.3261 | 1321 | 15 | 1322 | 23 | 8 | 34.7826 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6667 | 100.0000 | 97.3684 | 62.2901 | 481 | 0 | 481 | 13 | 8 | 61.5385 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.0939 | 98.2086 | 96.0042 | 48.3222 | 4605 | 84 | 4613 | 192 | 8 | 4.1667 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5211 | 99.2589 | 99.7847 | 51.9691 | 6027 | 45 | 6024 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7289 | 93.1818 | 96.3283 | 76.7629 | 902 | 66 | 892 | 34 | 8 | 23.5294 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 97.5241 | 95.5394 | 99.5931 | 24.6166 | 1842 | 86 | 1958 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7582 | 92.5128 | 99.2395 | 38.0448 | 902 | 73 | 1044 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9368 | 91.2482 | 98.9362 | 35.6164 | 636 | 61 | 744 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7225 | 97.5369 | 97.9087 | 80.2849 | 594 | 15 | 515 | 11 | 8 | 72.7273 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.9807 | 96.8504 | 93.1818 | 46.5587 | 123 | 4 | 123 | 9 | 8 | 88.8889 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2565 | 91.3831 | 99.4728 | 30.2126 | 1665 | 157 | 1698 | 9 | 8 | 88.8889 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2429 | 94.0621 | 98.5272 | 72.0921 | 697 | 44 | 669 | 10 | 8 | 80.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.3199 | 80.0000 | 91.3978 | 73.4286 | 108 | 27 | 85 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9411 | 99.9607 | 99.9214 | 54.0979 | 10174 | 4 | 10174 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 98.6735 | 98.5931 | 98.7541 | 82.3788 | 1822 | 26 | 1823 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 98.6673 | 98.5379 | 98.7971 | 83.0195 | 1887 | 28 | 1889 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 98.6576 | 98.5044 | 98.8114 | 83.1328 | 1910 | 29 | 1912 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_siren | * | 99.1919 | 99.0649 | 99.3191 | 79.7902 | 3496 | 33 | 3501 | 24 | 8 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | * | het | 95.1311 | 91.7586 | 98.7610 | 68.1314 | 2494 | 224 | 2471 | 31 | 8 | 25.8065 | |
| jli-custom | INDEL | I6_15 | * | hetalt | 97.1523 | 94.5503 | 99.9016 | 36.5262 | 8085 | 466 | 8123 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4424 | 96.0934 | 98.8298 | 71.9151 | 1894 | 77 | 1858 | 22 | 8 | 36.3636 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 75.9398 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4424 | 96.0934 | 98.8298 | 71.9151 | 1894 | 77 | 1858 | 22 | 8 | 36.3636 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6274 | 60.7154 | 96.8101 | 96.8027 | 2003 | 1296 | 2003 | 66 | 8 | 12.1212 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6438 | 99.6438 | 99.6438 | 69.4439 | 3077 | 11 | 3077 | 11 | 8 | 72.7273 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| jmaeng-gatk | SNP | tv | segdup | homalt | 99.4735 | 99.1970 | 99.7516 | 89.7966 | 3212 | 26 | 3212 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 95.3105 | 91.9315 | 98.9474 | 78.3927 | 1128 | 99 | 1128 | 12 | 8 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | homalt | 95.3164 | 91.9905 | 98.8917 | 79.6672 | 1160 | 101 | 1160 | 13 | 8 | 61.5385 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | * | 80.4978 | 77.5862 | 83.6364 | 94.2827 | 45 | 13 | 46 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | het | 86.6873 | 94.5946 | 80.0000 | 94.4030 | 35 | 2 | 36 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.9123 | 83.3333 | 97.6190 | 70.4225 | 455 | 91 | 451 | 11 | 8 | 72.7273 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | het | 98.2042 | 97.1125 | 99.3207 | 49.9393 | 2287 | 68 | 2047 | 14 | 8 | 57.1429 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2938 | 95.0000 | 99.7012 | 54.2527 | 2964 | 156 | 3003 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5723 | 95.7711 | 99.4425 | 60.5281 | 2310 | 102 | 2319 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | homalt | 98.8047 | 97.7741 | 99.8572 | 33.1849 | 10542 | 240 | 10491 | 15 | 8 | 53.3333 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5807 | 99.2754 | 99.8880 | 68.6524 | 16852 | 123 | 16941 | 19 | 8 | 42.1053 | |