PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19851-19900 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 66.7081 | 53.2787 | 89.1892 | 86.8093 | 65 | 57 | 66 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 65.7233 | 50.4831 | 94.1441 | 78.8168 | 209 | 205 | 209 | 13 | 8 | 61.5385 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 69.7158 | 58.9124 | 85.3712 | 87.1924 | 390 | 272 | 391 | 67 | 8 | 11.9403 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.9523 | 50.2994 | 91.6515 | 76.9456 | 504 | 498 | 505 | 46 | 8 | 17.3913 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 71.9347 | 56.7912 | 98.0910 | 82.9452 | 669 | 509 | 668 | 13 | 8 | 61.5385 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.0031 | 64.7102 | 86.4125 | 82.4649 | 882 | 481 | 884 | 139 | 8 | 5.7554 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | * | 85.1433 | 74.4759 | 99.3775 | 89.0629 | 2238 | 767 | 2235 | 14 | 8 | 57.1429 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.8694 | 87.8316 | 96.2963 | 86.2286 | 2649 | 367 | 2652 | 102 | 8 | 7.8431 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.7855 | 83.8319 | 98.9970 | 73.1888 | 3251 | 627 | 3257 | 33 | 8 | 24.2424 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.6304 | 83.9615 | 98.4500 | 76.1644 | 2094 | 400 | 2096 | 33 | 8 | 24.2424 | |
| gduggal-bwaplat | SNP | * | segdup | homalt | 98.8522 | 97.8032 | 99.9239 | 88.9336 | 10507 | 236 | 10502 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.5642 | 86.3306 | 99.7681 | 43.5629 | 3442 | 545 | 3442 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.8336 | 51.1501 | 88.5122 | 95.7847 | 467 | 446 | 470 | 61 | 8 | 13.1148 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.2187 | 58.7771 | 97.0684 | 92.5467 | 298 | 209 | 298 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.7476 | 75.5007 | 99.2126 | 87.1486 | 1131 | 367 | 1134 | 9 | 8 | 88.8889 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 27.5862 | 93.9734 | 0 | 0 | 40 | 105 | 8 | 7.6191 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 47.5000 | 88.2353 | 0 | 0 | 38 | 42 | 8 | 19.0476 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 15.9091 | 95.1300 | 0 | 0 | 14 | 74 | 8 | 10.8108 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 15.9091 | 95.1300 | 0 | 0 | 14 | 74 | 8 | 10.8108 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 94.9343 | 0 | 0 | 90 | 72 | 8 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 52.0000 | 94.9170 | 0 | 0 | 78 | 72 | 8 | 11.1111 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 56.5217 | 91.5751 | 0 | 0 | 26 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 52.3810 | 91.4634 | 0 | 0 | 22 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.7219 | 35.8609 | 99.5087 | 32.6223 | 1835 | 3282 | 1823 | 9 | 8 | 88.8889 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 49.8117 | 33.2739 | 99.0333 | 46.0603 | 933 | 1871 | 922 | 9 | 8 | 88.8889 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | het | 81.6901 | 100.0000 | 69.0476 | 94.4591 | 29 | 0 | 29 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | het | 78.3784 | 96.6667 | 65.9091 | 91.0751 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | * | 72.2222 | 73.5849 | 70.9091 | 91.2141 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | het | 78.3784 | 96.6667 | 65.9091 | 92.1147 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | het | 78.3784 | 96.6667 | 65.9091 | 92.2807 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.8971 | 71.2871 | 64.8148 | 95.6696 | 72 | 29 | 70 | 38 | 8 | 21.0526 | |
| gduggal-bwavard | SNP | tv | HG002compoundhet | homalt | 92.4344 | 86.2456 | 99.5802 | 40.9644 | 2922 | 466 | 2609 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4626 | 97.0981 | 99.8660 | 55.9944 | 9804 | 293 | 9692 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.8110 | 97.2305 | 94.4322 | 69.1595 | 1299 | 37 | 1289 | 76 | 8 | 10.5263 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.2250 | 97.0760 | 91.5367 | 74.6113 | 830 | 25 | 822 | 76 | 8 | 10.5263 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 81.4778 | 87.2727 | 76.4045 | 92.1551 | 144 | 21 | 136 | 42 | 8 | 19.0476 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.5405 | 55.8824 | 82.2222 | 96.8062 | 38 | 30 | 37 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | * | 97.4531 | 96.7509 | 98.1656 | 84.4194 | 1876 | 63 | 1873 | 35 | 8 | 22.8571 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | hetalt | 60.2626 | 43.8127 | 96.4912 | 42.7136 | 917 | 1176 | 220 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 46.1240 | 34.8974 | 68.0000 | 71.9101 | 119 | 222 | 17 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 47.7273 | 35.0000 | 75.0000 | 70.9091 | 133 | 247 | 24 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7030 | 98.3471 | 99.0615 | 63.1437 | 952 | 16 | 950 | 9 | 8 | 88.8889 | |