PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19601-19650 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | hetalt | 96.6553 | 93.5940 | 99.9237 | 57.4617 | 10461 | 716 | 10476 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6989 | 94.3463 | 97.0909 | 72.3061 | 267 | 16 | 267 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.4539 | 98.0645 | 98.8464 | 84.0977 | 1368 | 27 | 1371 | 16 | 8 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.7187 | 94.7933 | 98.7241 | 70.9453 | 619 | 34 | 619 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 93.6827 | 88.3154 | 99.7447 | 41.6713 | 3114 | 412 | 3126 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.0000 | 85.9551 | 94.4444 | 70.7581 | 153 | 25 | 153 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.8940 | 87.0028 | 99.6409 | 34.1996 | 2209 | 330 | 2220 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.8172 | 88.6758 | 99.5914 | 32.3428 | 1942 | 248 | 1950 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 92.8925 | 86.9894 | 99.6550 | 36.0629 | 2300 | 344 | 2311 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 93.6827 | 88.3154 | 99.7447 | 41.6713 | 3114 | 412 | 3126 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | * | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8707 | 99.8790 | 99.8625 | 38.9762 | 18161 | 22 | 18154 | 25 | 8 | 32.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9423 | 99.0599 | 98.8249 | 87.6792 | 843 | 8 | 841 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1395 | 99.1848 | 99.0942 | 85.7787 | 1095 | 9 | 1094 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e0 | homalt | 98.9359 | 98.3419 | 99.5370 | 87.6280 | 1720 | 29 | 1720 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7268 | 93.0195 | 98.5965 | 56.9811 | 573 | 43 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.3716 | 91.7119 | 99.3355 | 36.2626 | 1184 | 107 | 1196 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0716 | 98.5896 | 99.5583 | 44.7023 | 3635 | 52 | 3606 | 16 | 8 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.2840 | 82.6087 | 99.5316 | 37.2520 | 1729 | 364 | 1700 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9728 | 84.5626 | 98.4344 | 65.7965 | 493 | 90 | 503 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 96.1107 | 93.3110 | 99.0836 | 51.0924 | 837 | 60 | 865 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.2763 | 96.9365 | 99.6537 | 46.3792 | 2563 | 81 | 2590 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | het | 98.8659 | 98.0136 | 99.7330 | 50.5607 | 44458 | 901 | 44456 | 119 | 8 | 6.7227 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | het | 98.8752 | 98.0452 | 99.7194 | 53.1503 | 45492 | 907 | 45491 | 128 | 8 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1718 | 93.5484 | 42.2096 | 64.5582 | 58 | 4 | 149 | 204 | 8 | 3.9216 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.8882 | 100.0000 | 90.2736 | 37.3333 | 59 | 0 | 297 | 32 | 8 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_siren | * | 71.0638 | 81.6393 | 62.9139 | 77.5520 | 249 | 56 | 285 | 168 | 8 | 4.7619 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7774 | 99.7208 | 99.8342 | 53.5684 | 6071 | 17 | 6021 | 10 | 8 | 80.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.8643 | 90.1961 | 73.2824 | 95.0076 | 92 | 10 | 96 | 35 | 8 | 22.8571 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.4970 | 99.5995 | 99.3948 | 81.7770 | 1492 | 6 | 1478 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | het | 97.6425 | 97.1812 | 98.1081 | 82.4811 | 2172 | 63 | 2178 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | het | 97.6853 | 97.1831 | 98.1928 | 83.5574 | 2277 | 66 | 2282 | 42 | 8 | 19.0476 | |