PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19151-19200 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7016 | 98.6472 | 98.7561 | 82.9460 | 1823 | 25 | 1826 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7206 | 98.6423 | 98.7990 | 83.5904 | 1889 | 26 | 1892 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7364 | 98.6591 | 98.8138 | 83.7031 | 1913 | 26 | 1916 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8041 | 98.6070 | 99.0020 | 64.5686 | 991 | 14 | 992 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.6408 | 85.0117 | 99.3911 | 29.8196 | 1452 | 256 | 1469 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0787 | 99.4310 | 98.7288 | 45.5803 | 699 | 4 | 699 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.4611 | 78.1955 | 91.8182 | 83.7278 | 104 | 29 | 101 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.1825 | 84.1463 | 94.8598 | 82.1963 | 207 | 39 | 203 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8667 | 90.7216 | 97.2376 | 69.9834 | 352 | 36 | 352 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9799 | 98.8355 | 99.1247 | 71.3838 | 1358 | 16 | 1359 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | * | 98.8177 | 98.5836 | 99.0530 | 94.2377 | 1044 | 15 | 1046 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.4711 | 89.8077 | 99.6454 | 42.6596 | 2802 | 318 | 2810 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.9438 | 95.4802 | 94.4134 | 70.5107 | 169 | 8 | 169 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | homalt | 98.9217 | 98.3634 | 99.4863 | 87.6793 | 1743 | 29 | 1743 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | homalt | 99.7491 | 99.8229 | 99.6753 | 42.8668 | 3382 | 6 | 3377 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7958 | 97.9116 | 99.6962 | 48.3747 | 3610 | 77 | 3610 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.5246 | 91.6667 | 97.5664 | 80.0265 | 440 | 40 | 441 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1986 | 94.7313 | 99.7979 | 56.1836 | 5430 | 302 | 5431 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.0635 | 98.3051 | 86.5672 | 75.1852 | 58 | 1 | 58 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9881 | 86.7537 | 97.8947 | 61.8780 | 465 | 71 | 465 | 10 | 9 | 90.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.8354 | 100.0000 | 93.8650 | 76.7806 | 153 | 0 | 153 | 10 | 9 | 90.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.0134 | 85.8844 | 99.0844 | 88.5511 | 1515 | 249 | 1515 | 14 | 9 | 64.2857 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3823 | 95.3945 | 99.4547 | 79.4362 | 6566 | 317 | 6566 | 36 | 9 | 25.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7912 | 95.8467 | 99.8163 | 67.9237 | 5977 | 259 | 5977 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.6506 | 91.7874 | 97.6982 | 73.9680 | 380 | 34 | 382 | 9 | 9 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.8896 | 96.2236 | 97.5649 | 78.3480 | 637 | 25 | 601 | 15 | 9 | 60.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4723 | 99.6037 | 99.3412 | 88.4492 | 1508 | 6 | 1508 | 10 | 9 | 90.0000 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7370 | 99.5745 | 99.9001 | 63.0037 | 10998 | 47 | 10998 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7354 | 99.5686 | 99.9028 | 65.6605 | 11309 | 49 | 11309 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7377 | 99.5724 | 99.9037 | 65.6841 | 11409 | 49 | 11409 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6764 | 99.7409 | 99.6119 | 68.7361 | 3080 | 8 | 3080 | 12 | 9 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | het | 97.6459 | 98.3505 | 96.9512 | 90.3681 | 1908 | 32 | 1908 | 60 | 9 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | het | 97.6756 | 98.3715 | 96.9895 | 90.4284 | 1933 | 32 | 1933 | 60 | 9 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_siren | homalt | 99.8607 | 99.7854 | 99.9361 | 52.7521 | 17203 | 37 | 17200 | 11 | 9 | 81.8182 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5093 | 99.4855 | 99.5331 | 74.9202 | 2127 | 11 | 2345 | 11 | 9 | 81.8182 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.8913 | 21.7391 | 47.8261 | 39.4737 | 10 | 36 | 11 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | * | 92.1630 | 92.4528 | 91.8750 | 37.7432 | 147 | 12 | 147 | 13 | 9 | 69.2308 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | * | 66.7485 | 69.5652 | 64.1509 | 98.1232 | 32 | 14 | 34 | 19 | 9 | 47.3684 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 84.6703 | 85.1351 | 84.2105 | 80.3618 | 63 | 11 | 64 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | * | 79.8890 | 78.0488 | 81.8182 | 91.2201 | 64 | 18 | 63 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | I16_PLUS | HG002complexvar | het | 24.3337 | 14.7368 | 69.7674 | 51.5038 | 98 | 567 | 90 | 39 | 9 | 23.0769 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | het | 98.0320 | 96.4691 | 99.6463 | 55.8548 | 4508 | 165 | 4508 | 16 | 9 | 56.2500 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0755 | 97.3713 | 98.7899 | 89.5852 | 889 | 24 | 898 | 11 | 9 | 81.8182 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8815 | 98.4877 | 99.2784 | 83.9265 | 2605 | 40 | 2614 | 19 | 9 | 47.3684 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6882 | 97.7707 | 97.6057 | 78.5372 | 1228 | 28 | 1223 | 30 | 9 | 30.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | * | 97.7511 | 98.5925 | 96.9240 | 87.0372 | 1541 | 22 | 1544 | 49 | 9 | 18.3673 | |