PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19101-19150 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | het | 98.4430 | 97.1937 | 99.7248 | 66.0349 | 19568 | 565 | 19569 | 54 | 9 | 16.6667 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | het | 98.4558 | 97.2204 | 99.7229 | 66.1731 | 19797 | 566 | 19797 | 55 | 9 | 16.3636 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | * | 97.5589 | 95.4583 | 99.7540 | 82.3017 | 6894 | 328 | 6894 | 17 | 9 | 52.9412 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6656 | 99.5324 | 99.7991 | 68.6301 | 4470 | 21 | 4470 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4459 | 99.5389 | 99.3531 | 60.6036 | 17487 | 81 | 17508 | 114 | 9 | 7.8947 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | * | 99.2885 | 98.8286 | 99.7528 | 57.2287 | 24214 | 287 | 24208 | 60 | 9 | 15.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | * | 99.2918 | 98.8495 | 99.7380 | 59.7315 | 24745 | 288 | 24740 | 65 | 9 | 13.8462 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | * | 99.2889 | 98.8609 | 99.7207 | 59.7908 | 24995 | 288 | 24990 | 70 | 9 | 12.8571 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | * | 99.1139 | 98.4703 | 99.7659 | 61.6627 | 15771 | 245 | 15771 | 37 | 9 | 24.3243 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | * | 99.1334 | 98.5142 | 99.7605 | 64.2909 | 16244 | 245 | 16244 | 39 | 9 | 23.0769 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | * | 99.1333 | 98.5291 | 99.7448 | 64.3814 | 16412 | 245 | 16417 | 42 | 9 | 21.4286 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.5413 | 96.6355 | 98.4642 | 83.8745 | 517 | 18 | 577 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7503 | 97.5332 | 97.9684 | 78.6403 | 514 | 13 | 434 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8585 | 95.2922 | 98.4772 | 64.0511 | 587 | 29 | 582 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.8006 | 90.6323 | 99.3707 | 28.9674 | 1548 | 160 | 1579 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.1323 | 91.9608 | 98.5304 | 80.4728 | 1407 | 123 | 1408 | 21 | 9 | 42.8571 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.1323 | 91.9608 | 98.5304 | 80.4728 | 1407 | 123 | 1408 | 21 | 9 | 42.8571 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | het | 99.6665 | 99.4282 | 99.9059 | 56.5291 | 18085 | 104 | 18053 | 17 | 9 | 52.9412 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.4901 | 95.1220 | 90.0000 | 74.9304 | 78 | 4 | 81 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6673 | 97.7687 | 99.5826 | 65.8986 | 3812 | 87 | 3817 | 16 | 9 | 56.2500 | |
| jli-custom | SNP | * | map_l125_m0_e0 | homalt | 99.5817 | 99.2998 | 99.8651 | 65.5375 | 6665 | 47 | 6665 | 9 | 9 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7232 | 99.8605 | 99.5863 | 54.2148 | 27920 | 39 | 27921 | 116 | 9 | 7.7586 | |
| jli-custom | SNP | tv | map_siren | homalt | 99.8403 | 99.7332 | 99.9477 | 52.3546 | 17194 | 46 | 17191 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5926 | 96.9745 | 98.2186 | 79.0180 | 1218 | 38 | 1213 | 22 | 9 | 40.9091 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5459 | 99.3019 | 99.7911 | 49.8616 | 6686 | 47 | 6688 | 14 | 9 | 64.2857 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8731 | 97.9527 | 93.8800 | 90.3027 | 1531 | 32 | 1534 | 100 | 9 | 9.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | * | 95.7315 | 97.8326 | 93.7188 | 92.7638 | 1309 | 29 | 1313 | 88 | 9 | 10.2273 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | * | 95.8724 | 97.9403 | 93.8900 | 93.2577 | 1379 | 29 | 1383 | 90 | 9 | 10.0000 | |
| jmaeng-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6806 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.0868 | 89.5385 | 99.1220 | 39.9179 | 873 | 102 | 1016 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5356 | 98.2273 | 98.8458 | 72.2319 | 942 | 17 | 942 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | homalt | 99.2485 | 98.7329 | 99.7695 | 71.6659 | 3896 | 50 | 3896 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | homalt | 99.2738 | 98.7754 | 99.7773 | 74.0315 | 4033 | 50 | 4033 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | homalt | 99.2828 | 98.7905 | 99.7801 | 74.0325 | 4084 | 50 | 4084 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | * | 98.7848 | 98.7671 | 98.8026 | 73.3692 | 19146 | 239 | 19143 | 232 | 9 | 3.8793 | |
| raldana-dualsentieon | SNP | * | segdup | homalt | 99.9022 | 99.8883 | 99.9162 | 87.9114 | 10731 | 12 | 10731 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | HG002complexvar | het | 99.8369 | 99.6928 | 99.9815 | 16.7345 | 313799 | 967 | 313748 | 58 | 9 | 15.5172 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3694 | 98.9198 | 99.8231 | 52.8249 | 27657 | 302 | 27656 | 49 | 9 | 18.3673 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0544 | 98.5583 | 99.5556 | 65.3417 | 30694 | 449 | 30694 | 137 | 9 | 6.5693 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0544 | 98.5583 | 99.5556 | 65.3417 | 30694 | 449 | 30694 | 137 | 9 | 6.5693 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | * | 99.0308 | 99.0400 | 99.0217 | 66.4551 | 21562 | 209 | 21559 | 213 | 9 | 4.2254 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | * | 98.9377 | 98.9908 | 98.8846 | 75.4120 | 20305 | 207 | 20301 | 229 | 9 | 3.9301 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | * | 98.9365 | 98.9963 | 98.8768 | 75.5106 | 20515 | 208 | 20511 | 233 | 9 | 3.8627 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | het | 99.7643 | 99.5575 | 99.9720 | 20.9789 | 150064 | 667 | 149985 | 42 | 9 | 21.4286 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | homalt | 99.9758 | 99.9632 | 99.9884 | 22.8157 | 95076 | 35 | 95070 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9496 | 91.0460 | 99.2028 | 32.8775 | 1088 | 107 | 1120 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | homalt | 98.9071 | 98.9071 | 98.9071 | 83.4560 | 1267 | 14 | 1267 | 14 | 9 | 64.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6171 | 94.9468 | 98.3471 | 64.1481 | 714 | 38 | 714 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2545 | 99.2866 | 99.2223 | 77.4843 | 1531 | 11 | 1531 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.9839 | 85.7475 | 99.1986 | 31.0197 | 1107 | 184 | 1114 | 9 | 9 | 100.0000 | |