PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18751-18800 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6046 | 97.3842 | 97.8261 | 98.6310 | 1303 | 35 | 1305 | 29 | 10 | 34.4828 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | * | 97.7239 | 97.5142 | 97.9345 | 98.6965 | 1373 | 35 | 1375 | 29 | 10 | 34.4828 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e1 | * | 97.7374 | 97.4983 | 97.9777 | 98.7042 | 1403 | 36 | 1405 | 29 | 10 | 34.4828 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | het | 76.8418 | 62.5247 | 99.6632 | 73.8033 | 17752 | 10640 | 17754 | 60 | 10 | 16.6667 | |
| ckim-isaac | SNP | * | map_l125_m2_e0 | het | 77.2355 | 63.0466 | 99.6657 | 75.2911 | 18484 | 10834 | 18486 | 62 | 10 | 16.1290 | |
| ckim-isaac | SNP | * | map_l125_m2_e1 | het | 77.3202 | 63.1579 | 99.6699 | 75.2966 | 18720 | 10920 | 18722 | 62 | 10 | 16.1290 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.6206 | 94.3419 | 99.0120 | 44.7425 | 2301 | 138 | 2305 | 23 | 10 | 43.4783 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5449 | 90.4908 | 96.8125 | 75.4534 | 3835 | 403 | 3918 | 129 | 10 | 7.7519 | |
| ckim-isaac | SNP | ti | map_l100_m1_e0 | * | 80.0185 | 66.7647 | 99.8378 | 62.0110 | 32001 | 15930 | 32005 | 52 | 10 | 19.2308 | |
| ckim-isaac | SNP | ti | map_l100_m2_e0 | * | 80.3204 | 67.1841 | 99.8422 | 64.2807 | 32894 | 16067 | 32898 | 52 | 10 | 19.2308 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | * | 80.3859 | 67.2749 | 99.8441 | 64.2491 | 33291 | 16194 | 33295 | 52 | 10 | 19.2308 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.2347 | 73.3333 | 79.3750 | 87.3317 | 121 | 44 | 127 | 33 | 10 | 30.3030 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4518 | 99.2381 | 99.6663 | 75.2850 | 5080 | 39 | 5078 | 17 | 10 | 58.8235 | |
| ckim-vqsr | INDEL | * | segdup | * | 98.6516 | 98.7089 | 98.5943 | 95.8809 | 2523 | 33 | 2525 | 36 | 10 | 27.7778 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | het | 98.3872 | 98.7353 | 98.0415 | 69.0000 | 1093 | 14 | 851 | 17 | 10 | 58.8235 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6806 | 99.6087 | 99.7525 | 66.7490 | 4837 | 19 | 4837 | 12 | 10 | 83.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5603 | 99.5507 | 99.5700 | 75.2360 | 5096 | 23 | 5094 | 22 | 10 | 45.4545 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | het | 98.1505 | 98.3893 | 97.9130 | 86.6398 | 2199 | 36 | 2205 | 47 | 10 | 21.2766 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | het | 98.1424 | 98.3528 | 97.9328 | 87.3523 | 2269 | 38 | 2274 | 48 | 10 | 20.8333 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | het | 98.1708 | 98.3781 | 97.9644 | 87.4166 | 2305 | 38 | 2310 | 48 | 10 | 20.8333 | |
| dgrover-gatk | INDEL | * | segdup | * | 99.0625 | 99.1784 | 98.9470 | 94.7737 | 2535 | 21 | 2537 | 27 | 10 | 37.0370 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.2767 | 81.7073 | 87.0130 | 73.5395 | 67 | 15 | 67 | 10 | 10 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1862 | 98.0000 | 98.3732 | 57.8969 | 1029 | 21 | 1028 | 17 | 10 | 58.8235 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.7370 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6287 | 99.4366 | 99.8215 | 36.6123 | 6707 | 38 | 6709 | 12 | 10 | 83.3333 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.7690 | 99.6274 | 99.9110 | 70.9129 | 11231 | 42 | 11231 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.7775 | 99.6410 | 99.9143 | 73.3265 | 11657 | 42 | 11657 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.7799 | 99.6449 | 99.9152 | 73.3597 | 11785 | 42 | 11785 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | het | 98.2228 | 97.0557 | 99.4184 | 88.3044 | 4615 | 140 | 4615 | 27 | 10 | 37.0370 | |
| egarrison-hhga | SNP | ti | map_l125_m0_e0 | het | 98.9821 | 98.2694 | 99.7053 | 75.9224 | 8120 | 143 | 8120 | 24 | 10 | 41.6667 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | * | 99.1041 | 98.4989 | 99.7167 | 79.0350 | 7743 | 118 | 7743 | 22 | 10 | 45.4545 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | het | 98.2001 | 96.8971 | 99.5386 | 52.4849 | 4528 | 145 | 4530 | 21 | 10 | 47.6190 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.2141 | 97.8892 | 98.5411 | 67.8190 | 1484 | 32 | 1486 | 22 | 10 | 45.4545 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.3799 | 94.7426 | 98.0747 | 85.1647 | 865 | 48 | 866 | 17 | 10 | 58.8235 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7140 | 98.1541 | 99.2803 | 63.6850 | 3031 | 57 | 3035 | 22 | 10 | 45.4545 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4954 | 99.2083 | 99.7842 | 37.6168 | 7393 | 59 | 7397 | 16 | 10 | 62.5000 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | het | 99.0740 | 98.5184 | 99.6359 | 68.9508 | 7115 | 107 | 7115 | 26 | 10 | 38.4615 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1209 | 1.5974 | 67.3913 | 86.5889 | 20 | 1232 | 31 | 15 | 10 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | * | 96.2226 | 96.0656 | 96.3801 | 98.1181 | 293 | 12 | 426 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 60.6061 | 95.0000 | 0 | 0 | 20 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.3791 | 93.4783 | 78.5714 | 87.6923 | 43 | 3 | 44 | 12 | 10 | 83.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.0407 | 91.6667 | 77.5862 | 88.2114 | 44 | 4 | 45 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2492 | 99.3985 | 99.1004 | 39.5833 | 1322 | 8 | 1322 | 12 | 10 | 83.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.7762 | 88.0383 | 91.5842 | 74.4949 | 184 | 25 | 185 | 17 | 10 | 58.8235 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 60.8417 | 846 | 17 | 843 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2427 | 98.5185 | 90.3226 | 87.0184 | 133 | 2 | 140 | 15 | 10 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9116 | 99.9214 | 99.9018 | 54.3272 | 10170 | 8 | 10170 | 10 | 10 | 100.0000 | |