PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18551-18600 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | tv | map_l150_m2_e1 | homalt | 99.5761 | 99.4436 | 99.7089 | 69.3912 | 4111 | 23 | 4111 | 12 | 10 | 83.3333 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4326 | 99.2967 | 99.5689 | 75.2558 | 5083 | 36 | 5081 | 22 | 10 | 45.4545 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8319 | 98.4005 | 93.3939 | 90.2135 | 1538 | 25 | 1541 | 109 | 10 | 9.1743 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | * | 95.7468 | 98.3322 | 93.2939 | 93.1304 | 1415 | 24 | 1419 | 102 | 10 | 9.8039 | |
| ckim-gatk | INDEL | * | segdup | * | 97.7045 | 99.0219 | 96.4218 | 95.7792 | 2531 | 25 | 2533 | 94 | 10 | 10.6383 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3088 | 98.9160 | 97.7090 | 68.8770 | 1095 | 12 | 853 | 20 | 10 | 50.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9312 | 99.9607 | 99.9018 | 54.3175 | 10174 | 4 | 10174 | 10 | 10 | 100.0000 | |
| cchapple-custom | INDEL | * | segdup | * | 99.1318 | 98.9045 | 99.3602 | 94.4519 | 2528 | 28 | 2640 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | C6_15 | * | het | 95.1311 | 100.0000 | 90.7143 | 93.8570 | 7 | 0 | 254 | 26 | 10 | 38.4615 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | het | 95.9847 | 100.0000 | 92.2794 | 83.1056 | 4 | 0 | 251 | 21 | 10 | 47.6190 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | * | 85.4653 | 85.3147 | 85.6164 | 91.3558 | 122 | 21 | 125 | 21 | 10 | 47.6190 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7236 | 99.5599 | 99.8877 | 53.8466 | 14705 | 65 | 15125 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | D1_5 | map_siren | het | 97.0834 | 98.5946 | 95.6177 | 79.2698 | 2245 | 32 | 2291 | 105 | 10 | 9.5238 | |
| cchapple-custom | INDEL | D6_15 | map_siren | * | 94.5230 | 93.5167 | 95.5513 | 80.9225 | 476 | 33 | 494 | 23 | 10 | 43.4783 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.4194 | 99.4286 | 88.0952 | 73.9938 | 522 | 3 | 518 | 70 | 10 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4949 | 86.3386 | 99.5964 | 37.6133 | 2351 | 372 | 2468 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | * | 96.2468 | 96.9930 | 95.5120 | 87.5276 | 1516 | 47 | 1511 | 71 | 10 | 14.0845 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | homalt | 98.5318 | 98.5330 | 98.5306 | 83.5835 | 1209 | 18 | 1207 | 18 | 10 | 55.5556 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | homalt | 98.5323 | 98.5726 | 98.4921 | 84.5872 | 1243 | 18 | 1241 | 19 | 10 | 52.6316 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | het | 96.3159 | 97.1831 | 95.4641 | 88.2397 | 2277 | 66 | 2273 | 108 | 10 | 9.2593 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | homalt | 98.5552 | 98.5948 | 98.5156 | 84.6468 | 1263 | 18 | 1261 | 19 | 10 | 52.6316 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.4348 | 93.5685 | 99.4824 | 26.5399 | 1804 | 124 | 1922 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3148 | 95.4405 | 99.2642 | 37.6033 | 1235 | 59 | 1349 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3643 | 99.3432 | 95.4628 | 84.4394 | 605 | 4 | 526 | 25 | 10 | 40.0000 | |
| ckim-gatk | INDEL | I16_PLUS | * | het | 98.3735 | 98.3444 | 98.4027 | 76.2086 | 2673 | 45 | 2649 | 43 | 10 | 23.2558 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.6645 | 92.0290 | 97.4555 | 73.3740 | 381 | 33 | 383 | 10 | 10 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2085 | 91.0448 | 97.6000 | 62.4906 | 488 | 48 | 488 | 12 | 10 | 83.3333 | |
| ckim-gatk | SNP | * | HG002compoundhet | homalt | 99.4644 | 99.0354 | 99.8971 | 35.0629 | 10678 | 104 | 10677 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1690 | 98.9505 | 99.3886 | 67.1606 | 4714 | 50 | 4714 | 29 | 10 | 34.4828 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4505 | 99.3666 | 99.5347 | 87.4509 | 2353 | 15 | 2353 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | * | map_l250_m2_e0 | * | 70.6281 | 55.4724 | 97.1784 | 96.2246 | 4374 | 3511 | 4374 | 127 | 10 | 7.8740 | |
| ckim-gatk | SNP | * | map_l250_m2_e0 | het | 73.8651 | 59.9923 | 96.0839 | 96.7509 | 3116 | 2078 | 3116 | 127 | 10 | 7.8740 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | * | 70.8260 | 55.7155 | 97.1828 | 96.2381 | 4450 | 3537 | 4450 | 129 | 10 | 7.7519 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | het | 74.0542 | 60.2394 | 96.0909 | 96.7655 | 3171 | 2093 | 3171 | 129 | 10 | 7.7519 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4418 | 99.2664 | 97.6308 | 83.1720 | 9066 | 67 | 9066 | 220 | 10 | 4.5455 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4418 | 99.2664 | 97.6308 | 83.1720 | 9066 | 67 | 9066 | 220 | 10 | 4.5455 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7116 | 99.6705 | 99.7527 | 66.7352 | 4840 | 16 | 4840 | 12 | 10 | 83.3333 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5118 | 70.0599 | 91.9118 | 65.9148 | 117 | 50 | 125 | 11 | 10 | 90.9091 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.5631 | 57.2581 | 71.4286 | 99.8537 | 71 | 53 | 65 | 26 | 10 | 38.4615 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | hetalt | 90.1007 | 85.9903 | 94.6237 | 41.1392 | 178 | 29 | 176 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3175 | 87.0886 | 87.5476 | 72.9553 | 1376 | 204 | 1378 | 196 | 10 | 5.1020 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.7260 | 86.6888 | 0 | 0 | 47 | 234 | 10 | 4.2735 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 76.8743 | 65.1163 | 93.8144 | 55.2995 | 168 | 90 | 182 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | het | 88.9311 | 86.7470 | 91.2281 | 85.7500 | 72 | 11 | 104 | 10 | 10 | 100.0000 | |