PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18501-18550 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0040 | 98.6760 | 99.3342 | 81.0100 | 2385 | 32 | 2387 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | homalt | 99.8501 | 99.8107 | 99.8895 | 68.7779 | 16873 | 32 | 16269 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | homalt | 99.8554 | 99.8175 | 99.8934 | 71.0933 | 17500 | 32 | 16871 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.1521 | 99.7642 | 92.7925 | 63.8373 | 2538 | 6 | 2459 | 191 | 10 | 5.2356 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.0473 | 88.5714 | 38.8889 | 81.0526 | 31 | 4 | 21 | 33 | 10 | 30.3030 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | het | 98.7795 | 99.5137 | 98.0561 | 74.4857 | 13915 | 68 | 13670 | 271 | 10 | 3.6900 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.5515 | 69.4611 | 82.8125 | 75.1938 | 116 | 51 | 53 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5240 | 69.7071 | 98.1651 | 30.1282 | 833 | 362 | 535 | 10 | 10 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.2874 | 96.0490 | 0 | 0 | 22 | 65 | 10 | 15.3846 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.7368 | 95.1157 | 0 | 0 | 15 | 61 | 10 | 16.3934 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 21.8182 | 96.5582 | 0 | 0 | 12 | 43 | 10 | 23.2558 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 15.2174 | 95.9578 | 0 | 0 | 7 | 39 | 10 | 25.6410 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 76.3636 | 91.3043 | 65.6250 | 76.2963 | 21 | 2 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 68.9655 | 76.9231 | 62.5000 | 90.7781 | 20 | 6 | 20 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 14.2857 | 100.0000 | 7.6923 | 87.1287 | 1 | 0 | 1 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 10.3004 | 6.3830 | 26.6667 | 77.2727 | 3 | 44 | 4 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 48.0468 | 33.6538 | 83.9506 | 85.2727 | 70 | 138 | 68 | 13 | 10 | 76.9231 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 49.7009 | 35.0282 | 85.5263 | 70.6564 | 62 | 115 | 65 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 28.7671 | 18.4211 | 65.6250 | 88.7719 | 21 | 93 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 29.5302 | 18.9655 | 66.6667 | 89.9083 | 22 | 94 | 22 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 29.5302 | 18.9655 | 66.6667 | 90.0000 | 22 | 94 | 22 | 11 | 10 | 90.9091 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.3396 | 98.0392 | 90.9091 | 62.3288 | 100 | 2 | 100 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8131 | 97.1129 | 98.5235 | 67.3246 | 740 | 22 | 734 | 11 | 10 | 90.9091 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7545 | 99.7818 | 99.7273 | 51.7500 | 3658 | 8 | 3657 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | het | 99.2569 | 98.9103 | 99.6060 | 59.0976 | 3086 | 34 | 3034 | 12 | 10 | 83.3333 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1933 | 87.6162 | 99.5285 | 30.2073 | 2073 | 293 | 2111 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8932 | 93.9638 | 97.9036 | 75.4630 | 467 | 30 | 467 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8266 | 95.4876 | 98.2036 | 81.6484 | 656 | 31 | 656 | 12 | 10 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9932 | 98.5767 | 99.4132 | 76.4066 | 2424 | 35 | 2372 | 14 | 10 | 71.4286 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7111 | 99.6899 | 99.7323 | 69.3066 | 4822 | 15 | 4843 | 13 | 10 | 76.9231 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | homalt | 99.3100 | 99.0221 | 99.5996 | 68.7592 | 2734 | 27 | 2736 | 11 | 10 | 90.9091 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | het | 96.2459 | 97.1361 | 95.3719 | 90.8281 | 2883 | 85 | 2885 | 140 | 10 | 7.1429 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 97.2897 | 97.0127 | 97.5684 | 82.3852 | 1299 | 40 | 1284 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 97.3100 | 97.0029 | 97.6190 | 83.7387 | 1327 | 41 | 1312 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3625 | 97.0609 | 97.6659 | 83.8268 | 1354 | 41 | 1339 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5313 | 97.5124 | 99.5716 | 47.3892 | 588 | 15 | 2789 | 12 | 10 | 83.3333 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0953 | 99.8075 | 98.3931 | 40.1515 | 18148 | 35 | 18186 | 297 | 10 | 3.3670 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9319 | 97.2574 | 98.6159 | 84.9620 | 1383 | 39 | 1425 | 20 | 10 | 50.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6256 | 98.1818 | 99.0734 | 84.3863 | 1242 | 23 | 1283 | 12 | 10 | 83.3333 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.5425 | 98.6389 | 98.4462 | 84.2913 | 2609 | 36 | 2661 | 42 | 10 | 23.8095 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4664 | 99.3822 | 99.5507 | 61.1367 | 4826 | 30 | 4874 | 22 | 10 | 45.4545 | |
| ciseli-custom | INDEL | * | func_cds | homalt | 89.9834 | 87.6106 | 92.4883 | 28.5235 | 198 | 28 | 197 | 16 | 10 | 62.5000 | |
| ciseli-custom | INDEL | * | tech_badpromoters | het | 56.4103 | 56.4103 | 56.4103 | 50.6329 | 22 | 17 | 22 | 17 | 10 | 58.8235 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | het | 96.3935 | 97.2956 | 95.5080 | 91.3622 | 3166 | 88 | 3168 | 149 | 10 | 6.7114 | |
| ckim-dragen | SNP | tv | HG002complexvar | homalt | 99.9600 | 99.9306 | 99.9895 | 22.9484 | 95045 | 66 | 95148 | 10 | 10 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | homalt | 99.4789 | 99.2720 | 99.6867 | 59.7308 | 3818 | 28 | 3818 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | het | 97.2122 | 98.2504 | 96.1958 | 81.1222 | 4324 | 77 | 4324 | 171 | 10 | 5.8480 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | homalt | 99.5559 | 99.4171 | 99.6950 | 66.7792 | 3923 | 23 | 3923 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | homalt | 99.5708 | 99.4367 | 99.7053 | 69.4134 | 4060 | 23 | 4060 | 12 | 10 | 83.3333 | |