PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18401-18450 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | het | 99.7743 | 99.6591 | 99.8897 | 57.8575 | 18127 | 62 | 18108 | 20 | 10 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5626 | 98.0720 | 99.0581 | 75.3578 | 1933 | 38 | 1893 | 18 | 10 | 55.5556 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5626 | 98.0720 | 99.0581 | 75.3578 | 1933 | 38 | 1893 | 18 | 10 | 55.5556 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9232 | 99.8960 | 99.9505 | 56.3257 | 20178 | 21 | 20178 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | homalt | 99.5370 | 99.2849 | 99.7904 | 67.2503 | 6664 | 48 | 6664 | 14 | 10 | 71.4286 | |
| bgallagher-sentieon | SNP | * | segdup | homalt | 99.8883 | 99.8697 | 99.9069 | 88.1168 | 10729 | 14 | 10729 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7144 | 99.8963 | 99.5331 | 54.5778 | 27930 | 29 | 27929 | 131 | 10 | 7.6336 | |
| bgallagher-sentieon | SNP | tv | HG002complexvar | homalt | 99.9663 | 99.9453 | 99.9874 | 22.7972 | 95059 | 52 | 95044 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7013 | 99.6705 | 99.7321 | 66.3966 | 4840 | 16 | 4840 | 13 | 10 | 76.9231 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | * | 98.4884 | 99.1375 | 97.8477 | 81.2755 | 4138 | 36 | 4137 | 91 | 10 | 10.9890 | |
| gduggal-bwafb | SNP | ti | segdup | homalt | 99.8134 | 99.7602 | 99.8666 | 88.7165 | 7487 | 18 | 7487 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 51.2669 | 34.7444 | 97.7528 | 56.7121 | 435 | 817 | 435 | 10 | 10 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.5825 | 43.7326 | 93.4524 | 71.9533 | 157 | 202 | 157 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.6847 | 76.6260 | 97.1722 | 71.5227 | 377 | 115 | 378 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | * | 80.3840 | 67.7078 | 98.9002 | 92.0959 | 2428 | 1158 | 2428 | 27 | 10 | 37.0370 | |
| gduggal-bwaplat | INDEL | * | map_siren | homalt | 83.1471 | 71.4501 | 99.4235 | 85.0984 | 1897 | 758 | 1897 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | het | 74.0091 | 59.8013 | 97.0717 | 73.7610 | 662 | 445 | 663 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | homalt | 84.4618 | 76.1246 | 94.8498 | 71.9277 | 220 | 69 | 221 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.3755 | 75.1159 | 98.8810 | 48.3447 | 972 | 322 | 972 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 83.0598 | 71.3760 | 99.3174 | 53.6319 | 2910 | 1167 | 2910 | 20 | 10 | 50.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8252 | 97.9371 | 97.7135 | 64.8985 | 3798 | 80 | 3718 | 87 | 10 | 11.4943 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.1756 | 97.7947 | 96.5643 | 68.6200 | 2439 | 55 | 2389 | 85 | 10 | 11.7647 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | homalt | 98.1354 | 96.6740 | 99.6417 | 77.0204 | 3953 | 136 | 3893 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | het | 81.4711 | 96.1487 | 70.6811 | 95.2079 | 1448 | 58 | 1432 | 594 | 10 | 1.6835 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | homalt | 98.2519 | 97.1579 | 99.3708 | 87.2425 | 2393 | 70 | 2369 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | homalt | 98.2454 | 97.0961 | 99.4222 | 88.0153 | 2608 | 78 | 2581 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | homalt | 98.2472 | 97.0935 | 99.4288 | 88.0788 | 2639 | 79 | 2611 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | * | 86.4567 | 95.9854 | 78.6490 | 94.9013 | 1315 | 55 | 1304 | 354 | 10 | 2.8249 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | homalt | 98.7927 | 97.7441 | 99.8639 | 61.4588 | 8839 | 204 | 8807 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | * | func_cds | het | 88.4234 | 85.0467 | 92.0792 | 43.5754 | 182 | 32 | 186 | 16 | 10 | 62.5000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.6815 | 77.7114 | 97.9925 | 71.6067 | 781 | 224 | 781 | 16 | 10 | 62.5000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.7102 | 48.2815 | 93.6306 | 83.3598 | 295 | 316 | 294 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 73.9330 | 59.3156 | 98.1108 | 66.7086 | 780 | 535 | 779 | 15 | 10 | 66.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.2119 | 54.7872 | 90.3509 | 80.9683 | 103 | 85 | 103 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.2265 | 56.5217 | 89.2989 | 95.0257 | 481 | 370 | 484 | 58 | 10 | 17.2414 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.4671 | 81.5166 | 99.1361 | 72.5927 | 1376 | 312 | 1377 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | het | 62.3303 | 45.4974 | 98.9334 | 94.9642 | 2319 | 2778 | 2319 | 25 | 10 | 40.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | * | 70.5375 | 54.6373 | 99.4907 | 88.8156 | 6056 | 5028 | 6056 | 31 | 10 | 32.2581 | |
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | het | 74.3090 | 59.3741 | 99.2822 | 90.5912 | 4288 | 2934 | 4288 | 31 | 10 | 32.2581 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 23.9090 | 13.7056 | 93.5673 | 71.9672 | 162 | 1020 | 160 | 11 | 10 | 90.9091 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.1733 | 64.2951 | 99.6920 | 43.7482 | 3904 | 2168 | 3884 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 62.3288 | 90.0950 | 0 | 1 | 91 | 55 | 10 | 18.1818 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 55.6452 | 90.5847 | 0 | 1 | 69 | 55 | 10 | 18.1818 | |