PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18301-18350 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0318 | 94.2197 | 95.8580 | 61.6780 | 326 | 20 | 324 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9157 | 97.2833 | 98.5564 | 70.7710 | 752 | 21 | 751 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | * | 76.7503 | 68.1034 | 87.9121 | 83.6036 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | * | 76.7503 | 68.1034 | 87.9121 | 83.9789 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | homalt | 81.7259 | 76.6667 | 87.5000 | 82.1029 | 69 | 21 | 70 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 61.1765 | 61.9048 | 60.4651 | 96.8101 | 26 | 16 | 26 | 17 | 10 | 58.8235 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0251 | 98.7500 | 99.3017 | 67.9499 | 1422 | 18 | 1422 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0584 | 100.0000 | 98.1343 | 71.2755 | 525 | 0 | 526 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6427 | 96.1360 | 99.1974 | 40.4967 | 1244 | 50 | 1236 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8154 | 96.2235 | 99.4609 | 53.5902 | 1860 | 73 | 1845 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1847 | 98.9875 | 99.3827 | 46.8597 | 6648 | 68 | 6601 | 41 | 10 | 24.3902 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3372 | 96.2662 | 98.4323 | 54.8939 | 1186 | 46 | 1193 | 19 | 10 | 52.6316 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | homalt | 95.2945 | 94.1748 | 96.4413 | 53.1667 | 291 | 18 | 271 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6496 | 93.4426 | 91.8699 | 73.4341 | 114 | 8 | 113 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.7763 | 83.1250 | 97.5845 | 71.8559 | 399 | 81 | 404 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.7188 | 97.6759 | 99.7842 | 42.6822 | 4539 | 108 | 4623 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | * | 98.9923 | 98.1217 | 99.8786 | 58.7041 | 28784 | 551 | 28785 | 35 | 10 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | * | 99.0101 | 98.1724 | 99.8622 | 61.4718 | 29705 | 553 | 29707 | 41 | 10 | 24.3902 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | * | 99.0186 | 98.1877 | 99.8636 | 61.5506 | 30015 | 554 | 30018 | 41 | 10 | 24.3902 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.2222 | 66.6667 | 58.3333 | 92.7449 | 34 | 17 | 35 | 25 | 10 | 40.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | * | 81.0503 | 79.0698 | 83.1325 | 85.7143 | 68 | 18 | 69 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7132 | 98.1565 | 99.2762 | 66.6200 | 2609 | 49 | 2606 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.0508 | 90.1716 | 98.2788 | 45.2919 | 578 | 63 | 571 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.5237 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.6799 | 99.4589 | 99.9020 | 69.8014 | 11212 | 61 | 11212 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.6916 | 99.4786 | 99.9056 | 72.3853 | 11638 | 61 | 11638 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.6950 | 99.4842 | 99.9066 | 72.4121 | 11766 | 61 | 11766 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.4390 | 98.0603 | 98.8206 | 66.9267 | 3185 | 63 | 3184 | 38 | 10 | 26.3158 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.8623 | 89.4444 | 96.5517 | 85.0649 | 644 | 76 | 644 | 23 | 10 | 43.4783 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9224 | 96.5693 | 99.3139 | 68.5406 | 3040 | 108 | 3040 | 21 | 10 | 47.6190 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6376 | 93.6473 | 97.7143 | 85.3434 | 855 | 58 | 855 | 20 | 10 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1773 | 98.9247 | 99.4312 | 56.1924 | 1748 | 19 | 1748 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7292 | 99.5876 | 99.8713 | 60.0265 | 10866 | 45 | 10866 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | het | 97.8428 | 96.5178 | 99.2046 | 78.4007 | 2744 | 99 | 2744 | 22 | 10 | 45.4545 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | * | 97.9240 | 96.5649 | 99.3219 | 86.9151 | 2783 | 99 | 2783 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | * | 97.9485 | 96.6049 | 99.3300 | 87.0027 | 2817 | 99 | 2817 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5178 | 99.1870 | 97.8576 | 69.7090 | 1342 | 11 | 1416 | 31 | 10 | 32.2581 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | homalt | 83.3361 | 73.4973 | 96.2162 | 85.8482 | 538 | 194 | 712 | 28 | 10 | 35.7143 | |
| asubramanian-gatk | SNP | tv | HG002complexvar | het | 98.1875 | 96.4619 | 99.9759 | 22.1458 | 145398 | 5333 | 145329 | 35 | 10 | 28.5714 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7580 | 97.6793 | 97.8367 | 88.4863 | 1389 | 33 | 1402 | 31 | 10 | 32.2581 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.9023 | 98.7458 | 99.0593 | 82.5203 | 4094 | 52 | 4107 | 39 | 10 | 25.6410 | |
| asubramanian-gatk | SNP | tv | map_siren | het | 74.9187 | 59.9671 | 99.8022 | 78.0195 | 17156 | 11453 | 17153 | 34 | 10 | 29.4118 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.6650 | 96.0317 | 99.3548 | 89.1657 | 1694 | 70 | 1694 | 11 | 10 | 90.9091 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8422 | 97.9805 | 99.7191 | 81.0931 | 6744 | 139 | 6744 | 19 | 10 | 52.6316 | |