PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18251-18300 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.4200 | 94.0678 | 96.8116 | 67.6966 | 333 | 21 | 334 | 11 | 10 | 90.9091 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.6224 | 99.6697 | 99.5753 | 80.0565 | 4224 | 14 | 4220 | 18 | 10 | 55.5556 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | het | 99.5284 | 99.3794 | 99.6779 | 54.5836 | 4644 | 29 | 4642 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | SNP | * | map_siren | het | 99.3673 | 99.4219 | 99.3127 | 56.6962 | 90465 | 526 | 90451 | 626 | 10 | 1.5974 | |
| raldana-dualsentieon | SNP | * | segdup | * | 99.5928 | 99.7934 | 99.3931 | 89.8391 | 28009 | 58 | 28003 | 171 | 10 | 5.8480 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9932 | 98.5200 | 99.4710 | 64.4487 | 17308 | 260 | 17299 | 92 | 10 | 10.8696 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2933 | 97.4269 | 99.1752 | 74.7089 | 8898 | 235 | 8898 | 74 | 10 | 13.5135 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2933 | 97.4269 | 99.1752 | 74.7089 | 8898 | 235 | 8898 | 74 | 10 | 13.5135 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | * | 97.8620 | 97.3842 | 98.3446 | 98.9844 | 1303 | 35 | 1307 | 22 | 10 | 45.4545 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | * | 97.9323 | 97.4432 | 98.4263 | 99.0377 | 1372 | 36 | 1376 | 22 | 10 | 45.4545 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | hetalt | 82.7498 | 72.4696 | 96.4286 | 49.8208 | 179 | 68 | 270 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 90.1203 | 82.4985 | 99.2938 | 30.7241 | 1334 | 283 | 1406 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.8927 | 82.1104 | 99.3046 | 32.2337 | 1354 | 295 | 1428 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8638 | 100.0000 | 99.7280 | 50.5648 | 3666 | 0 | 3666 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 84.9771 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0343 | 98.3940 | 99.6831 | 76.6868 | 6004 | 98 | 5976 | 19 | 10 | 52.6316 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8632 | 98.1277 | 99.6099 | 65.9765 | 3826 | 73 | 3830 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.0639 | 91.0895 | 99.4009 | 86.9340 | 2157 | 211 | 2157 | 13 | 10 | 76.9231 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | homalt | 99.1768 | 98.6739 | 99.6848 | 64.1086 | 3795 | 51 | 3795 | 12 | 10 | 83.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1923 | 92.5234 | 98.0198 | 73.2238 | 495 | 40 | 495 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 81.2517 | 69.3391 | 98.1067 | 37.6609 | 640 | 283 | 570 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | * | 97.6974 | 97.2203 | 98.1793 | 98.7700 | 1399 | 40 | 1402 | 26 | 10 | 38.4615 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | homalt | 94.6777 | 94.8220 | 94.5338 | 66.1957 | 293 | 16 | 294 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.3651 | 72.8155 | 87.2093 | 85.2991 | 150 | 56 | 150 | 22 | 10 | 45.4545 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.3649 | 82.7068 | 84.0336 | 84.5855 | 110 | 23 | 100 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 70.0000 | 91.3043 | 56.7568 | 82.5472 | 21 | 2 | 21 | 16 | 10 | 62.5000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7571 | 85.6250 | 87.9195 | 87.5626 | 137 | 23 | 131 | 18 | 10 | 55.5556 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0268 | 98.8184 | 99.2361 | 41.7338 | 2258 | 27 | 2728 | 21 | 10 | 47.6190 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 81.3204 | 72.2826 | 92.9412 | 97.5589 | 133 | 51 | 158 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 81.4309 | 72.4324 | 92.9825 | 97.5939 | 134 | 51 | 159 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.1712 | 90.4306 | 87.9464 | 73.4911 | 189 | 20 | 197 | 27 | 10 | 37.0370 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.5179 | 97.5818 | 93.5395 | 36.9311 | 686 | 17 | 1361 | 94 | 10 | 10.6383 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 77.6887 | 86.0465 | 70.8108 | 85.0746 | 222 | 36 | 262 | 108 | 10 | 9.2593 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9865 | 98.4716 | 99.5069 | 53.0976 | 1353 | 21 | 15941 | 79 | 10 | 12.6582 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 78.8389 | 67.0350 | 95.6882 | 90.8414 | 364 | 179 | 577 | 26 | 10 | 38.4615 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 82.8388 | 70.8349 | 99.7415 | 27.5927 | 3852 | 1586 | 3858 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.3750 | 84.3750 | 84.3750 | 86.7220 | 54 | 10 | 54 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | homalt | 85.0746 | 85.0746 | 85.0746 | 87.3106 | 57 | 10 | 57 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.3250 | 96.7213 | 84.7222 | 88.5350 | 59 | 2 | 61 | 11 | 10 | 90.9091 | |