PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18051-18100 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | het | 98.3289 | 97.2454 | 99.4367 | 88.6583 | 5119 | 145 | 5119 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6867 | 98.3374 | 99.0385 | 67.1791 | 3194 | 54 | 3193 | 31 | 11 | 35.4839 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9916 | 95.5731 | 98.4528 | 83.7652 | 1209 | 56 | 1209 | 19 | 11 | 57.8947 | |
| eyeh-varpipe | INDEL | * | func_cds | * | 95.4669 | 93.9326 | 97.0522 | 79.5644 | 418 | 27 | 428 | 13 | 11 | 84.6154 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | homalt | 97.2434 | 98.1707 | 96.3333 | 91.9420 | 161 | 3 | 289 | 11 | 11 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | * | 84.1952 | 73.5770 | 98.3950 | 83.2672 | 1409 | 506 | 1410 | 23 | 11 | 47.8261 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | * | 84.2482 | 73.6462 | 98.4160 | 83.3218 | 1428 | 511 | 1429 | 23 | 11 | 47.8261 | |
| ckim-isaac | INDEL | I16_PLUS | * | hetalt | 65.0682 | 48.5224 | 98.7366 | 42.1910 | 1018 | 1080 | 1016 | 13 | 11 | 84.6154 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2467 | 94.3223 | 94.1712 | 78.1883 | 515 | 31 | 517 | 32 | 11 | 34.3750 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | homalt | 98.1197 | 98.2021 | 98.0375 | 84.5627 | 1147 | 21 | 1149 | 23 | 11 | 47.8261 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 59.3672 | 76.6667 | 48.4375 | 84.0000 | 46 | 14 | 31 | 33 | 11 | 33.3333 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.3786 | 97.8261 | 78.9474 | 94.7368 | 45 | 1 | 45 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 12.5000 | 100.0000 | 6.6667 | 88.9706 | 1 | 0 | 1 | 14 | 11 | 78.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8776 | 95.4545 | 92.3518 | 91.7142 | 483 | 23 | 483 | 40 | 11 | 27.5000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | * | 93.8505 | 95.5684 | 92.1933 | 92.5267 | 496 | 23 | 496 | 42 | 11 | 26.1905 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8020 | 95.4802 | 92.1818 | 92.5766 | 507 | 24 | 507 | 43 | 11 | 25.5814 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | homalt | 95.0538 | 93.4461 | 96.7177 | 90.8251 | 442 | 31 | 442 | 15 | 11 | 73.3333 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.0564 | 88.9542 | 44.2005 | 85.0316 | 757 | 94 | 785 | 991 | 11 | 1.1100 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.6376 | 97.1213 | 76.5824 | 85.4250 | 4116 | 122 | 4150 | 1269 | 11 | 0.8668 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4326 | 96.2516 | 80.0940 | 76.2162 | 3030 | 118 | 3066 | 762 | 11 | 1.4436 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | homalt | 98.6901 | 97.9459 | 99.4456 | 67.1380 | 3767 | 79 | 3767 | 21 | 11 | 52.3810 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6666 | 99.3783 | 92.2222 | 67.1222 | 2238 | 14 | 2241 | 189 | 11 | 5.8201 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3876 | 99.6809 | 99.0961 | 47.6724 | 6248 | 20 | 6249 | 57 | 11 | 19.2982 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 37.9771 | 33.2554 | 44.2615 | 81.8105 | 711 | 1427 | 860 | 1083 | 11 | 1.0157 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 17.3710 | 9.5750 | 93.4911 | 35.2490 | 187 | 1766 | 158 | 11 | 11 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | * | 74.1899 | 72.3404 | 76.1364 | 88.0759 | 34 | 13 | 67 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | het | 77.8088 | 82.7586 | 73.4177 | 88.3136 | 24 | 5 | 58 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 37.8378 | 72.5926 | 0 | 108 | 14 | 23 | 11 | 47.8261 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 36.1111 | 72.9323 | 0 | 66 | 13 | 23 | 11 | 47.8261 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 37.5000 | 63.6364 | 0 | 106 | 18 | 30 | 11 | 36.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 1.2251 | 0.6250 | 30.7692 | 75.3555 | 3 | 477 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 3.5346 | 1.8750 | 30.7692 | 75.2381 | 3 | 157 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | * | 92.6851 | 92.7778 | 92.5926 | 34.6021 | 167 | 13 | 175 | 14 | 11 | 78.5714 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.9560 | 96.0290 | 95.8832 | 44.2273 | 3313 | 137 | 3284 | 141 | 11 | 7.8014 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | homalt | 98.2526 | 96.7441 | 99.8089 | 63.7260 | 8914 | 300 | 8881 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | homalt | 98.2305 | 96.6996 | 99.8105 | 63.7425 | 8995 | 307 | 8956 | 17 | 11 | 64.7059 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 50.4626 | 34.9887 | 90.4762 | 43.6782 | 155 | 288 | 133 | 14 | 11 | 78.5714 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 48.9473 | 54.4444 | 44.4584 | 86.7689 | 343 | 287 | 353 | 441 | 11 | 2.4943 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 45.2707 | 43.8743 | 46.7588 | 85.7511 | 419 | 536 | 440 | 501 | 11 | 2.1956 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.3941 | 93.8999 | 87.1407 | 79.9532 | 4033 | 262 | 4032 | 595 | 11 | 1.8487 | |