PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17701-17750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.2241 | 87.7430 | 99.4356 | 30.6136 | 2076 | 290 | 2114 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.7538 | 63.8444 | 96.2069 | 68.5125 | 279 | 158 | 279 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.3906 | 75.6471 | 98.0153 | 59.9388 | 643 | 207 | 642 | 13 | 11 | 84.6154 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 64.6064 | 50.2642 | 90.4008 | 85.4064 | 856 | 847 | 857 | 91 | 11 | 12.0879 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.4366 | 54.9763 | 90.6250 | 82.2960 | 116 | 95 | 116 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.5120 | 87.0957 | 98.6467 | 70.2422 | 5386 | 798 | 5394 | 74 | 11 | 14.8649 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.0208 | 86.8227 | 97.8809 | 74.0738 | 3413 | 518 | 3418 | 74 | 11 | 14.8649 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.2731 | 80.7561 | 99.7985 | 45.8371 | 5447 | 1298 | 5447 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | * | 58.2240 | 41.2034 | 99.2037 | 94.0967 | 3239 | 4622 | 3239 | 26 | 11 | 42.3077 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.0473 | 70.6121 | 97.9019 | 63.3528 | 3311 | 1378 | 3313 | 71 | 11 | 15.4930 | |
| gduggal-bwaplat | SNP | tv | segdup | * | 98.5186 | 97.8083 | 99.2394 | 94.9737 | 8345 | 187 | 8350 | 64 | 11 | 17.1875 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 32.7485 | 94.0314 | 0 | 0 | 56 | 115 | 11 | 9.5652 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 53.4653 | 87.9042 | 0 | 0 | 54 | 47 | 11 | 23.4043 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 62.0482 | 94.8028 | 0 | 0 | 103 | 63 | 11 | 17.4603 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 56.5517 | 95.0274 | 0 | 0 | 82 | 63 | 11 | 17.4603 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.0000 | 100.0000 | 66.6667 | 87.1622 | 1 | 0 | 38 | 19 | 11 | 57.8947 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.0000 | 100.0000 | 60.0000 | 87.9679 | 1 | 0 | 27 | 18 | 11 | 61.1111 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.6811 | 0 | 0 | 23 | 23 | 11 | 47.8261 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 46.1538 | 96.6205 | 0 | 0 | 18 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.7213 | 0 | 0 | 28 | 28 | 11 | 39.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.1166 | 86.3636 | 76.4706 | 96.8460 | 38 | 6 | 39 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 58.4346 | 41.3660 | 99.4845 | 45.9233 | 2350 | 3331 | 2316 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 56.0471 | 39.0837 | 99.0276 | 46.9019 | 1237 | 1928 | 1222 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | * | 81.5504 | 81.1765 | 81.9277 | 93.4646 | 69 | 16 | 68 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | het | 86.2385 | 100.0000 | 75.8065 | 94.4395 | 47 | 0 | 47 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | INDEL | I1_5 | * | homalt | 95.1435 | 90.7626 | 99.9687 | 33.2973 | 54846 | 5582 | 54343 | 17 | 11 | 64.7059 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.1859 | 74.1259 | 70.3448 | 95.1146 | 106 | 37 | 102 | 43 | 11 | 25.5814 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0866 | 98.7946 | 99.3804 | 48.6184 | 4016 | 49 | 4010 | 25 | 11 | 44.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | homalt | 98.3810 | 96.9900 | 99.8126 | 63.0879 | 7540 | 234 | 7457 | 14 | 11 | 78.5714 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0619 | 97.7461 | 96.3872 | 69.9220 | 2125 | 49 | 2081 | 78 | 11 | 14.1026 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.0740 | 97.6929 | 94.5078 | 73.4922 | 1355 | 32 | 1325 | 77 | 11 | 14.2857 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | homalt | 98.7765 | 97.7209 | 99.8553 | 63.6981 | 9004 | 210 | 8971 | 13 | 11 | 84.6154 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | homalt | 98.7497 | 97.6672 | 99.8565 | 63.7165 | 9085 | 217 | 9047 | 13 | 11 | 84.6154 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.3699 | 57.0370 | 95.3237 | 59.0574 | 77 | 58 | 265 | 13 | 11 | 84.6154 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3995 | 99.6241 | 99.1760 | 40.3752 | 1325 | 5 | 1324 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 91.6751 | 85.4753 | 98.8445 | 42.9599 | 6132 | 1042 | 941 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | homalt | 99.3896 | 98.9444 | 99.8389 | 72.9039 | 11154 | 119 | 11154 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | homalt | 99.4033 | 98.9657 | 99.8448 | 74.8531 | 11578 | 121 | 11578 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | homalt | 99.4055 | 98.9685 | 99.8465 | 74.9037 | 11705 | 122 | 11705 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6794 | 99.6260 | 97.7506 | 58.4645 | 3996 | 15 | 3998 | 92 | 11 | 11.9565 | |