PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17451-17500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | * | 96.1820 | 96.1580 | 96.2060 | 83.7201 | 1777 | 71 | 1775 | 70 | 12 | 17.1429 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.8749 | 91.2134 | 86.6534 | 76.1180 | 436 | 42 | 435 | 67 | 12 | 17.9104 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4372 | 80.5254 | 95.6471 | 87.5400 | 8154 | 1972 | 8152 | 371 | 12 | 3.2345 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | het | 87.7835 | 81.0668 | 95.7136 | 88.2752 | 8465 | 1977 | 8463 | 379 | 12 | 3.1662 | |
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | * | 90.7563 | 88.5246 | 93.1034 | 96.3179 | 270 | 35 | 270 | 20 | 12 | 60.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | * | 91.3580 | 89.4260 | 93.3754 | 96.4605 | 296 | 35 | 296 | 21 | 12 | 57.1429 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e1 | * | 91.4110 | 89.4895 | 93.4169 | 96.5296 | 298 | 35 | 298 | 21 | 12 | 57.1429 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | het | 98.9962 | 98.2804 | 99.7226 | 54.6285 | 44579 | 780 | 44576 | 124 | 12 | 9.6774 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | het | 98.9994 | 98.3060 | 99.7027 | 57.0672 | 45613 | 786 | 45611 | 136 | 12 | 8.8235 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | het | 99.0006 | 98.3219 | 99.6887 | 57.1362 | 46111 | 787 | 46109 | 144 | 12 | 8.3333 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | het | 98.7065 | 97.7001 | 99.7339 | 59.7345 | 27739 | 653 | 27739 | 74 | 12 | 16.2162 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | * | 98.6394 | 97.4883 | 99.8180 | 33.8383 | 17039 | 439 | 17003 | 31 | 12 | 38.7097 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | * | 98.6208 | 97.4926 | 99.7755 | 64.1831 | 12442 | 320 | 12442 | 28 | 12 | 42.8571 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | homalt | 99.7461 | 99.6016 | 99.8910 | 65.4505 | 11001 | 44 | 11001 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | homalt | 99.7531 | 99.6126 | 99.8940 | 67.9785 | 11314 | 44 | 11314 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1151 | 98.3983 | 99.8425 | 40.4315 | 8232 | 134 | 8242 | 13 | 12 | 92.3077 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5510 | 97.9508 | 97.1545 | 69.9817 | 478 | 10 | 478 | 14 | 12 | 85.7143 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3133 | 97.9336 | 98.6960 | 78.2485 | 1327 | 28 | 1211 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7620 | 98.9890 | 98.5361 | 63.9274 | 1077 | 11 | 1077 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6118 | 99.3853 | 99.8394 | 49.0173 | 11802 | 73 | 11810 | 19 | 12 | 63.1579 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2478 | 94.4444 | 94.0520 | 77.1259 | 272 | 16 | 253 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.7692 | 100.0000 | 83.0986 | 73.1061 | 59 | 0 | 59 | 12 | 12 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2264 | 100.0000 | 92.7273 | 75.4829 | 153 | 0 | 153 | 12 | 12 | 100.0000 | |
| jli-custom | SNP | * | HG002compoundhet | homalt | 99.8794 | 99.8887 | 99.8702 | 35.2217 | 10770 | 12 | 10769 | 14 | 12 | 85.7143 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.9880 | 99.0063 | 98.9698 | 87.7821 | 2690 | 27 | 2690 | 28 | 12 | 42.8571 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7850 | 99.0930 | 98.4789 | 88.6741 | 1748 | 16 | 1748 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2319 | 99.4770 | 98.9880 | 80.7127 | 6847 | 36 | 6847 | 70 | 12 | 17.1429 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7367 | 99.6698 | 99.8037 | 67.8161 | 9660 | 32 | 9660 | 19 | 12 | 63.1579 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6872 | 99.6632 | 99.7112 | 69.9339 | 6215 | 21 | 6215 | 18 | 12 | 66.6667 | |
| jli-custom | SNP | * | map_l250_m0_e0 | * | 97.2831 | 95.5972 | 99.0296 | 90.2998 | 2041 | 94 | 2041 | 20 | 12 | 60.0000 | |
| jli-custom | SNP | * | segdup | * | 99.5966 | 99.8397 | 99.3547 | 89.2512 | 28022 | 45 | 28022 | 182 | 12 | 6.5934 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | * | 98.1086 | 97.1895 | 99.0453 | 86.0929 | 2801 | 81 | 2801 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | * | 98.1308 | 97.2222 | 99.0566 | 86.1913 | 2835 | 81 | 2835 | 27 | 12 | 44.4444 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0778 | 85.6776 | 99.5114 | 35.1466 | 2333 | 390 | 2444 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9557 | 99.8850 | 56.3788 | 11291 | 5 | 11291 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3585 | 98.5547 | 98.1630 | 68.8817 | 1091 | 16 | 855 | 16 | 12 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.3614 | 99.8289 | 98.8983 | 63.0673 | 1167 | 2 | 1167 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9984 | 96.9697 | 95.0464 | 75.6777 | 320 | 10 | 307 | 16 | 12 | 75.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3458 | 99.8122 | 98.8837 | 68.5948 | 1063 | 2 | 1063 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8164 | 89.8325 | 98.1699 | 67.2797 | 751 | 85 | 751 | 14 | 12 | 85.7143 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5328 | 99.1399 | 99.9287 | 67.1581 | 16829 | 146 | 16829 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5131 | 99.3427 | 99.6841 | 80.0486 | 10730 | 71 | 10730 | 34 | 12 | 35.2941 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5328 | 99.1399 | 99.9287 | 67.1581 | 16829 | 146 | 16829 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7677 | 99.7111 | 99.8244 | 68.3834 | 9664 | 28 | 9664 | 17 | 12 | 70.5882 | |
| jmaeng-gatk | SNP | * | segdup | homalt | 99.4625 | 99.0412 | 99.8873 | 88.3992 | 10640 | 103 | 10640 | 12 | 12 | 100.0000 | |