PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17401-17450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | * | 93.9650 | 94.6405 | 93.2990 | 94.3329 | 724 | 41 | 724 | 52 | 12 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_siren | homalt | 98.9049 | 98.2309 | 99.5884 | 65.8705 | 16935 | 305 | 16935 | 70 | 12 | 17.1429 | |
| gduggal-snapfb | SNP | tv | segdup | * | 98.5144 | 99.4491 | 97.5971 | 92.7173 | 8485 | 47 | 8489 | 209 | 12 | 5.7416 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 48.9268 | 34.4420 | 84.4376 | 85.3796 | 466 | 887 | 548 | 101 | 12 | 11.8812 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | het | 79.4200 | 74.1056 | 85.5556 | 95.1768 | 435 | 152 | 462 | 78 | 12 | 15.3846 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 94.3471 | 90.8784 | 98.0910 | 75.2992 | 538 | 54 | 668 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 94.4381 | 90.9984 | 98.1481 | 75.9754 | 556 | 55 | 689 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | homalt | 94.3455 | 90.8065 | 98.1716 | 76.0928 | 563 | 57 | 698 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 2.1951 | 1.1236 | 47.3684 | 61.6162 | 1 | 88 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 3.6290 | 1.8868 | 47.3684 | 61.2245 | 1 | 52 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.9811 | 59.8485 | 0 | 87 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.9811 | 59.5420 | 0 | 27 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 36.7347 | 63.4328 | 0 | 414 | 18 | 31 | 12 | 38.7097 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | het | 79.7395 | 96.6667 | 67.8571 | 96.3721 | 58 | 2 | 95 | 45 | 12 | 26.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | het | 80.7151 | 96.9697 | 69.1275 | 96.5865 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | het | 80.7151 | 96.9697 | 69.1275 | 96.6682 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | het | 69.8061 | 87.5000 | 58.0645 | 43.6364 | 21 | 3 | 18 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.7991 | 95.5378 | 98.0941 | 72.6859 | 1670 | 78 | 1647 | 32 | 12 | 37.5000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.7849 | 97.2272 | 81.6917 | 72.6965 | 3822 | 109 | 3757 | 842 | 12 | 1.4252 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.9225 | 80.8559 | 91.6667 | 87.7792 | 359 | 85 | 341 | 31 | 12 | 38.7097 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.9558 | 90.5660 | 80.0000 | 72.3502 | 48 | 5 | 48 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.7881 | 87.2659 | 92.4603 | 52.8972 | 233 | 34 | 233 | 19 | 12 | 63.1579 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1283 | 95.9484 | 92.3759 | 88.5876 | 521 | 22 | 521 | 43 | 12 | 27.9070 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | SNP | * | func_cds | homalt | 99.8569 | 99.9570 | 99.7569 | 23.2466 | 6976 | 3 | 6976 | 17 | 12 | 70.5882 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.3870 | 99.3850 | 93.5645 | 65.8553 | 2424 | 15 | 2428 | 167 | 12 | 7.1856 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9631 | 100.0000 | 97.9475 | 55.8853 | 858 | 0 | 859 | 18 | 12 | 66.6667 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.3067 | 96.2092 | 85.0867 | 94.8490 | 736 | 29 | 736 | 129 | 12 | 9.3023 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
| hfeng-pmm1 | INDEL | * | * | hetalt | 96.9096 | 94.0524 | 99.9458 | 58.8135 | 23736 | 1501 | 23960 | 13 | 12 | 92.3077 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.1021 | 89.2612 | 99.4983 | 58.0297 | 9085 | 1093 | 9122 | 46 | 12 | 26.0870 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | het | 83.2432 | 80.0000 | 86.7606 | 94.6220 | 276 | 69 | 308 | 47 | 12 | 25.5319 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 16.5989 | 10.9091 | 34.6939 | 47.3118 | 36 | 294 | 34 | 64 | 12 | 18.7500 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 24.5228 | 33.9401 | 19.1964 | 80.6408 | 578 | 1125 | 602 | 2534 | 12 | 0.4736 | |
| gduggal-snapplat | SNP | * | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.9120 | 89.3082 | 84.6411 | 75.9718 | 2272 | 272 | 2276 | 413 | 12 | 2.9056 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | homalt | 96.1786 | 92.7004 | 99.9279 | 60.1160 | 16649 | 1311 | 16632 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.0660 | 73.1690 | 98.7769 | 51.5065 | 2018 | 740 | 2019 | 25 | 12 | 48.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.3545 | 40.9277 | 95.8084 | 61.2079 | 300 | 433 | 320 | 14 | 12 | 85.7143 | |
| gduggal-snapvard | SNP | tv | segdup | het | 97.6892 | 96.9926 | 98.3958 | 95.3896 | 5128 | 159 | 5091 | 83 | 12 | 14.4578 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | * | 87.2111 | 92.7869 | 82.2674 | 98.0750 | 283 | 22 | 283 | 61 | 12 | 19.6721 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | * | 87.7841 | 93.3535 | 82.8418 | 98.1723 | 309 | 22 | 309 | 64 | 12 | 18.7500 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | * | 87.8531 | 93.3934 | 82.9333 | 98.2167 | 311 | 22 | 311 | 64 | 12 | 18.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.0000 | 77.2727 | 60.7143 | 97.3585 | 34 | 10 | 34 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9387 | 11.0818 | 65.0794 | 81.9484 | 42 | 337 | 41 | 22 | 12 | 54.5455 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |