PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17251-17300 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | * | 75.8724 | 69.5312 | 83.4862 | 85.1499 | 89 | 39 | 91 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | het | 71.4516 | 57.0142 | 95.6803 | 75.8729 | 443 | 334 | 443 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | het | 71.9569 | 57.6543 | 95.6967 | 78.7456 | 467 | 343 | 467 | 21 | 12 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.5634 | 83.9506 | 85.1852 | 72.6351 | 68 | 13 | 69 | 12 | 12 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8598 | 93.2331 | 98.6389 | 71.3663 | 1240 | 90 | 1232 | 17 | 12 | 70.5882 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.9605 | 78.3357 | 97.7193 | 42.0142 | 546 | 151 | 557 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9438 | 95.5133 | 98.4177 | 45.4467 | 1256 | 59 | 1244 | 20 | 12 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6210 | 97.6408 | 99.6211 | 50.6118 | 6746 | 163 | 6836 | 26 | 12 | 46.1538 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.6787 | 97.6320 | 99.7480 | 46.7338 | 4659 | 113 | 4750 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | hetalt | 97.3702 | 95.0217 | 99.8378 | 29.8617 | 8112 | 425 | 8001 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.9550 | 96.3415 | 99.6234 | 50.0434 | 3397 | 129 | 3439 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.9550 | 96.3415 | 99.6234 | 50.0434 | 3397 | 129 | 3439 | 13 | 12 | 92.3077 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.3948 | 71.7742 | 81.6514 | 99.9459 | 89 | 35 | 89 | 20 | 12 | 60.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5687 | 99.2552 | 99.8842 | 53.3003 | 14660 | 110 | 14664 | 17 | 12 | 70.5882 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1374 | 89.0909 | 91.2088 | 85.8549 | 245 | 30 | 249 | 24 | 12 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.1073 | 88.5417 | 91.7293 | 71.7322 | 255 | 33 | 244 | 22 | 12 | 54.5455 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.6589 | 89.8785 | 91.4530 | 77.6930 | 222 | 25 | 214 | 20 | 12 | 60.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.4254 | 93.6982 | 95.1641 | 69.9844 | 565 | 38 | 551 | 28 | 12 | 42.8571 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4850 | 99.2977 | 99.6730 | 35.9284 | 3959 | 28 | 3962 | 13 | 12 | 92.3077 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | het | 98.4376 | 97.2165 | 99.6897 | 74.3678 | 8033 | 230 | 8033 | 25 | 12 | 48.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5805 | 96.4115 | 92.8177 | 35.7016 | 403 | 15 | 1344 | 104 | 12 | 11.5385 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2759 | 99.4208 | 99.1315 | 77.0261 | 2403 | 14 | 2397 | 21 | 12 | 57.1429 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | homalt | 74.0705 | 59.2551 | 98.7643 | 89.0815 | 1050 | 722 | 1039 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9145 | 99.4543 | 98.3806 | 72.3198 | 729 | 4 | 729 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2643 | 98.8474 | 99.6847 | 73.5302 | 5060 | 59 | 5058 | 16 | 12 | 75.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.8121 | 88.0383 | 98.1333 | 66.6073 | 736 | 100 | 736 | 14 | 12 | 85.7143 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4409 | 98.9502 | 99.9364 | 58.3709 | 55047 | 584 | 55037 | 35 | 12 | 34.2857 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | homalt | 99.8048 | 99.7870 | 99.8225 | 66.5790 | 16869 | 36 | 16869 | 30 | 12 | 40.0000 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e0 | homalt | 99.8100 | 99.7928 | 99.8273 | 69.0265 | 17339 | 36 | 17339 | 30 | 12 | 40.0000 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e1 | homalt | 99.8117 | 99.7947 | 99.8288 | 69.0610 | 17496 | 36 | 17496 | 30 | 12 | 40.0000 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | homalt | 99.8580 | 99.8385 | 99.8775 | 60.1505 | 17931 | 29 | 17931 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | homalt | 99.8607 | 99.8416 | 99.8798 | 62.5925 | 18280 | 29 | 18280 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | homalt | 99.8621 | 99.8432 | 99.8810 | 62.5754 | 18465 | 29 | 18465 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | * | 99.1145 | 98.9696 | 99.2598 | 79.4196 | 7780 | 81 | 7778 | 58 | 12 | 20.6897 | |
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | het | 99.4603 | 99.2216 | 99.7001 | 64.9458 | 15297 | 120 | 15293 | 46 | 12 | 26.0870 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | het | 99.4695 | 99.2394 | 99.7006 | 66.3242 | 15657 | 120 | 15653 | 47 | 12 | 25.5319 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | het | 99.4686 | 99.2408 | 99.6974 | 66.3712 | 15817 | 121 | 15813 | 48 | 12 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | * | hetalt | 96.9055 | 94.0484 | 99.9416 | 58.8044 | 23735 | 1502 | 23954 | 14 | 12 | 85.7143 | |
| hfeng-pmm2 | INDEL | * | map_siren | homalt | 99.3610 | 99.4350 | 99.2871 | 79.4763 | 2640 | 15 | 2646 | 19 | 12 | 63.1579 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | het | 99.0752 | 99.2276 | 98.9232 | 72.7259 | 13875 | 108 | 13872 | 151 | 12 | 7.9470 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | het | 99.2617 | 99.4357 | 99.0884 | 69.5075 | 15330 | 87 | 15326 | 141 | 12 | 8.5106 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | het | 99.2723 | 99.4486 | 99.0966 | 70.7844 | 15690 | 87 | 15686 | 143 | 12 | 8.3916 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | het | 99.2765 | 99.4541 | 99.0995 | 70.8119 | 15851 | 87 | 15847 | 144 | 12 | 8.3333 | |