PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17151-17200 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 63.4344 | 65.0794 | 61.8705 | 90.0572 | 82 | 44 | 86 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 63.7616 | 64.8855 | 62.6761 | 90.4313 | 85 | 46 | 89 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 63.0961 | 63.7037 | 62.5000 | 90.4573 | 86 | 49 | 90 | 54 | 13 | 24.0741 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 11.3208 | 6.7669 | 34.6154 | 89.9614 | 9 | 124 | 9 | 17 | 13 | 76.4706 | |
| ciseli-custom | INDEL | I1_5 | func_cds | het | 78.5185 | 89.8305 | 69.7368 | 38.2114 | 53 | 6 | 53 | 23 | 13 | 56.5217 | |
| ckim-dragen | INDEL | I1_5 | map_siren | * | 98.1515 | 98.0699 | 98.2333 | 81.2007 | 2947 | 58 | 2947 | 53 | 13 | 24.5283 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4435 | 95.6053 | 99.3537 | 62.1556 | 2306 | 106 | 2306 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3235 | 99.1976 | 99.4496 | 87.1665 | 2349 | 19 | 2349 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | ti | HG002compoundhet | homalt | 99.8648 | 99.9053 | 99.8243 | 30.4352 | 7387 | 7 | 7388 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2554 | 98.9184 | 99.5947 | 75.9330 | 6585 | 72 | 6635 | 27 | 13 | 48.1481 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.1175 | 95.4167 | 96.8288 | 81.8217 | 458 | 22 | 458 | 15 | 12 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7960 | 96.0049 | 99.6553 | 58.3497 | 5503 | 229 | 5493 | 19 | 12 | 63.1579 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | homalt | 99.4419 | 99.1761 | 99.7092 | 62.9046 | 4454 | 37 | 4457 | 13 | 12 | 92.3077 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.2619 | 97.2450 | 74.3373 | 66.4617 | 2612 | 74 | 2636 | 910 | 12 | 1.3187 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.1283 | 97.5299 | 73.9648 | 66.0177 | 1303 | 33 | 1304 | 459 | 12 | 2.6144 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6954 | 99.6733 | 99.7175 | 49.5386 | 6711 | 22 | 6707 | 19 | 12 | 63.1579 | |
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | * | 97.2121 | 97.3976 | 97.0273 | 89.9044 | 2807 | 75 | 2807 | 86 | 12 | 13.9535 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | * | 97.2113 | 97.4280 | 96.9956 | 89.9894 | 2841 | 75 | 2841 | 88 | 12 | 13.6364 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 98.1189 | 97.4026 | 98.8458 | 61.2336 | 1200 | 32 | 1199 | 14 | 12 | 85.7143 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3201 | 99.0507 | 99.5909 | 51.8830 | 3652 | 35 | 3652 | 15 | 12 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | het | 94.0611 | 95.9161 | 92.2764 | 90.5184 | 869 | 37 | 908 | 76 | 12 | 15.7895 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | het | 94.1271 | 95.8874 | 92.4303 | 90.5506 | 886 | 38 | 928 | 76 | 12 | 15.7895 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4702 | 93.2292 | 95.7447 | 81.9664 | 358 | 26 | 360 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.5361 | 96.8504 | 90.4412 | 37.6147 | 123 | 4 | 123 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 66.7446 | 61.4035 | 73.1034 | 97.1877 | 105 | 66 | 106 | 39 | 12 | 30.7692 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 4.4684 | 35.0877 | 2.3861 | 92.1778 | 20 | 37 | 22 | 900 | 12 | 1.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 26.5487 | 83.3333 | 15.7895 | 99.1732 | 5 | 1 | 6 | 32 | 12 | 37.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 67.6923 | 75.8621 | 61.1111 | 90.8397 | 22 | 7 | 22 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3747 | 93.0131 | 97.8593 | 82.1067 | 639 | 48 | 640 | 14 | 12 | 85.7143 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4398 | 100.0000 | 98.8858 | 68.4996 | 1065 | 0 | 1065 | 12 | 12 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7595 | 99.7595 | 70.6652 | 6221 | 15 | 6221 | 15 | 12 | 80.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5989 | 77.2532 | 93.4884 | 70.0139 | 180 | 53 | 201 | 14 | 12 | 85.7143 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8425 | 93.0514 | 98.8062 | 60.2346 | 616 | 46 | 1407 | 17 | 12 | 70.5882 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.1652 | 96.3415 | 86.5169 | 61.6379 | 79 | 3 | 77 | 12 | 12 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_siren | het | 97.7116 | 97.5610 | 97.8628 | 81.6928 | 1640 | 41 | 1740 | 38 | 12 | 31.5789 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.8750 | 100.0000 | 93.9394 | 65.3240 | 188 | 0 | 186 | 12 | 12 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3143 | 96.0145 | 98.6499 | 82.5698 | 1060 | 44 | 1096 | 15 | 12 | 80.0000 | |