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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 339 340 341 342 343 344 345 346 347 ... 1720 1721 » 17101-17150 / 86044 show all
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	87.2063	83.5000	91.2568	61.1465	167	33	167	16	13	81.2500
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	89.0200	83.2370	95.6667	70.2085	288	58	287	13	13	100.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.1734	87.6404	92.8571	52.1822	234	33	234	18	13	72.2222
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6230	99.8728	97.4042	72.7150	785	1	788	21	13	61.9048
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3938	98.9601	99.8314	43.2370	8279	87	8291	14	13	92.8571
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.4707	92.3849	98.7698	48.9915	1104	91	1124	14	13	92.8571
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6163	97.7687	99.4788	68.1894	3812	87	3817	20	13	65.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.4668	93.9469	99.1255	62.0415	2266	146	2267	20	13	65.0000
jmaeng-gatk	SNP	tv	HG002complexvar	homalt	99.2171	98.4618	99.9840	23.0284	93648	1463	93634	15	13	86.6667
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5829	99.6423	99.5235	65.6204	27579	99	27569	132	13	9.8485
jmaeng-gatk	SNP	tv	map_l125_m1_e0	*	83.4629	73.2830	96.9274	85.3732	11737	4279	11735	372	13	3.4946
jmaeng-gatk	SNP	tv	map_l125_m2_e0	*	83.8941	73.9220	96.9762	86.2792	12189	4300	12187	380	13	3.4211
jmaeng-gatk	SNP	tv	map_l125_m2_e1	het	87.8827	81.2376	95.7119	88.2796	8573	1980	8571	384	13	3.3854
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	17.0622	9.6110	75.9259	78.6561	42	395	41	13	13	100.0000
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
ckim-dragen	SNP	tv	map_l100_m1_e0	homalt	99.6733	99.5134	99.8336	57.5832	8999	44	8999	15	13	86.6667
ckim-dragen	SNP	tv	map_l100_m2_e0	homalt	99.6739	99.5116	99.8367	60.2338	9169	45	9169	15	13	86.6667
ckim-dragen	SNP	tv	map_l100_m2_e1	homalt	99.6770	99.5162	99.8382	60.2316	9257	45	9257	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m1_e0	homalt	99.5812	99.4198	99.7432	62.3307	5826	34	5826	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m2_e0	homalt	99.5838	99.4183	99.7499	65.0891	5982	35	5982	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m2_e1	homalt	99.5877	99.4238	99.7522	65.1046	6039	35	6039	15	13	86.6667
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9687	87.2567	99.4808	35.1295	2376	347	2491	13	13	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3829	11292	4	11292	14	13	92.8571
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4416	99.2346	99.6494	43.8167	3630	28	5401	19	13	68.4211
cchapple-custom	INDEL	*	map_siren	homalt	98.6746	98.1544	99.2003	78.4454	2606	49	2605	21	13	61.9048
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.0216	93.3602	96.7433	74.7215	464	33	505	17	13	76.4706
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.2565	95.0509	97.4930	80.7300	653	34	700	18	13	72.2222
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	80.5000	97.2526	68.6708	63.3133	3823	108	3849	1756	13	0.7403
ciseli-custom	SNP	*	map_l250_m0_e0	het	62.5646	57.7025	68.3215	96.1752	869	637	867	402	13	3.2338
ckim-dragen	INDEL	*	map_l125_m1_e0	*	96.6350	96.8201	96.4505	88.3709	2040	67	2038	75	13	17.3333
ckim-dragen	INDEL	*	map_l125_m2_e0	*	96.6158	96.9035	96.3299	89.2603	2128	68	2126	81	13	16.0494
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4251	99.4428	99.4073	78.7466	6068	34	6038	36	13	36.1111
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6130	91.3876	98.0745	66.7520	764	72	764	15	13	86.6667
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2068	99.2630	99.1506	88.9811	1751	13	1751	15	13	86.6667
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7780	99.7214	99.8347	68.2340	9665	27	9665	16	13	81.2500
ckim-gatk	SNP	tv	HG002compoundhet	het	99.2595	98.9728	99.5478	55.8932	4625	48	4623	21	13	61.9048
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5211	99.2995	97.7547	53.9013	567	4	566	13	13	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2823	95.8333	98.7758	84.0415	1242	54	1291	16	13	81.2500
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.7867	95.4172	98.1962	86.7315	812	39	871	16	13	81.2500
cchapple-custom	SNP	ti	map_l250_m0_e0	*	95.9625	94.5985	97.3664	93.5930	1296	74	1294	35	13	37.1429
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	50.4202	43.4783	60.0000	40.6780	20	26	21	14	13	92.8571
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.0000	69.2308	33.3333	58.4615	9	4	9	18	13	72.2222

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