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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 338 339 340 341 342 343 344 345 346 ... 1720 1721 » 17051-17100 / 86044 show all
astatham-gatk	SNP	*	map_l150_m2_e0	homalt	99.3470	98.8375	99.8618	70.8404	11563	136	11563	16	13	81.2500
astatham-gatk	SNP	*	map_l150_m2_e1	homalt	99.3541	98.8501	99.8633	70.8527	11691	136	11691	16	13	81.2500
astatham-gatk	SNP	ti	map_l100_m1_e0	homalt	99.6258	99.3318	99.9216	57.0466	17840	120	17840	14	13	92.8571
astatham-gatk	SNP	ti	map_l100_m2_e0	homalt	99.6302	99.3391	99.9231	59.5727	18188	121	18188	14	13	92.8571
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
astatham-gatk	SNP	ti	map_l125_m0_e0	het	89.1339	80.7092	99.5223	81.9410	6669	1594	6667	32	13	40.6250
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8999	98.0990	99.7140	75.1504	14294	277	14294	41	13	31.7073
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8999	98.0990	99.7140	75.1504	14294	277	14294	41	13	31.7073
astatham-gatk	SNP	tv	map_l150_m1_e0	*	91.6254	84.8240	99.6125	79.0350	9256	1656	9254	36	13	36.1111
astatham-gatk	SNP	tv	map_l150_m2_e0	*	91.6536	84.8613	99.6277	80.3003	9636	1719	9634	36	13	36.1111
astatham-gatk	SNP	tv	map_l150_m2_e1	*	91.6416	84.8374	99.6324	80.3148	9758	1744	9756	36	13	36.1111
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.5041	98.4993	96.5287	73.6731	722	11	723	26	13	50.0000
asubramanian-gatk	INDEL	*	map_l100_m1_e0	het	89.5146	84.5190	95.1378	89.5888	1889	346	1898	97	13	13.4021
asubramanian-gatk	INDEL	*	map_l100_m2_e0	het	89.6413	84.6987	95.1965	90.0770	1954	353	1962	99	13	13.1313
asubramanian-gatk	INDEL	*	map_l100_m2_e1	het	89.6239	84.6778	95.1836	90.0945	1984	359	1996	101	13	12.8713
jli-custom	INDEL	D16_PLUS	*	hetalt	97.3443	95.3958	99.3741	36.1316	1844	89	2064	13	13	100.0000
jli-custom	INDEL	D16_PLUS	*	homalt	99.0858	99.2908	98.8817	67.1754	1680	12	1680	19	13	68.4211
jli-custom	INDEL	D16_PLUS	HG002complexvar	hetalt	94.0295	91.0931	97.1616	45.1497	225	22	445	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3685	95.4428	99.3735	36.0555	1843	88	2062	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7625	99.0392	98.4873	71.5773	1237	12	1237	19	13	68.4211
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.2360	95.2999	99.2524	31.1832	1541	76	1726	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.1957	95.2092	99.2668	33.4959	1570	79	1760	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3685	95.4428	99.3735	36.0555	1843	88	2062	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7625	99.0392	98.4873	71.5773	1237	12	1237	19	13	68.4211
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	97.0712	95.8175	98.3581	49.4267	1260	55	1258	21	13	61.9048
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e0	homalt	99.7463	99.5741	99.9191	65.3928	17301	74	17301	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e1	homalt	99.7486	99.5779	99.9199	65.4177	17458	74	17458	14	13	92.8571
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3929	99.1600	99.6269	75.2923	5076	43	5074	19	13	68.4211
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.8238	92.6407	99.2335	33.1757	1498	119	1683	13	13	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.3820	99.2126	90.0000	53.0201	126	1	126	14	13	92.8571
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e1	homalt	99.7587	99.6280	99.8898	72.7027	11783	44	11789	13	13	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	homalt	99.7102	99.5884	99.8324	61.6545	7742	32	7742	13	13	100.0000
ltrigg-rtg1	SNP	tv	map_siren	*	99.4402	99.2053	99.6762	52.0914	45565	365	45564	148	13	8.7838
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.6383	94.3878	96.9223	68.8174	2035	121	2047	65	13	20.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.4548	98.0660	98.8468	71.0240	5020	99	5057	59	13	22.0339
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8537	97.8565	99.8715	37.6633	10135	222	10103	13	13	100.0000
ltrigg-rtg1	INDEL	D1_5	HG002compoundhet	homalt	94.9357	94.5017	95.3737	63.6951	275	16	268	13	13	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2272	90.2128	96.4502	72.2490	1272	138	1277	47	13	27.6596
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9159	94.4855	99.4747	56.3830	7933	463	7953	42	13	30.9524
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	82.9686	72.3099	97.3129	50.8954	504	193	507	14	13	92.8571
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1571	98.6358	99.6839	46.3252	11713	162	11670	37	13	35.1351
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	87.3660	78.4928	98.5011	39.0737	927	254	920	14	13	92.8571
ltrigg-rtg1	INDEL	I1_5	HG002compoundhet	hetalt	96.8755	94.0503	99.8757	63.2515	10512	665	10446	13	13	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.9782	96.4324	99.5745	60.1289	8109	300	8190	35	13	37.1429
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	53.4400	37.6975	91.7582	47.5504	167	276	167	15	13	86.6667

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