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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 337 338 339 340 341 342 343 344 345 ... 1720 1721 » 17001-17050 / 86044 show all
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	68.9655	73.1707	65.2174	70.5128	30	11	30	16	13	81.2500
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	76.1905	62.8659	96.6825	50.9872	408	241	408	14	13	92.8571
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.2397	84.0426	95.1220	53.9757	474	90	468	24	13	54.1667
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3613	99.1592	99.5643	51.5120	3656	31	3656	16	13	81.2500
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.7710	98.6981	98.8439	73.8011	1592	21	1539	18	13	72.2222
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9105	98.7393	99.0822	76.8986	2428	31	2375	22	13	59.0909
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.8084	91.7464	98.0818	67.8189	767	69	767	15	13	86.6667
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3736	99.2639	99.4836	88.1512	2697	20	2697	14	13	92.8571
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3490	99.4898	99.2086	89.1572	1755	9	1755	14	13	92.8571
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	95.3656	94.1057	96.6597	54.6402	463	29	463	16	13	81.2500
anovak-vg	INDEL	I6_15	segdup	het	38.0775	28.9157	55.7377	91.0688	24	59	34	27	13	48.1481
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.9824	97.9405	98.0243	36.9430	1284	27	1290	26	13	50.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.7788	99.3179	98.2456	73.2684	728	5	728	13	13	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.6552	88.4686	99.4878	37.7483	2409	314	2525	13	13	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.9811	99.2278	94.8339	60.4956	257	2	257	14	13	92.8571
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5524	94.0012	99.2459	33.5901	1520	97	1711	13	13	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5247	93.9357	99.2605	36.0262	1549	100	1745	13	13	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3750	99.1863	99.5644	51.3896	3657	30	3657	16	13	81.2500
asubramanian-gatk	INDEL	D1_5	HG002complexvar	homalt	99.7403	99.6226	99.8582	60.0860	10558	40	10565	15	13	86.6667
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5409	99.1719	99.9126	55.4663	25149	210	25156	22	13	59.0909
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.7213	91.5952	98.0684	63.9529	534	49	660	13	13	100.0000
asubramanian-gatk	INDEL	I1_5	HG002complexvar	het	99.1051	98.3342	99.8882	58.4164	17886	303	17868	20	13	65.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.7291	97.9738	99.4961	65.8453	3820	79	4344	22	13	59.0909
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.7915	98.1506	89.8032	88.0725	1486	28	1506	171	13	7.6023
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2429	98.9091	99.5790	55.5792	27654	305	27674	117	13	11.1111
bgallagher-sentieon	INDEL	I16_PLUS	HG002complexvar	homalt	97.9398	100.0000	95.9627	70.5667	309	0	309	13	13	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.9061	98.7929	68.3700	1064	1	1064	13	13	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.9904	94.8590	99.2198	62.4389	2288	124	2289	18	13	72.2222
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3553	99.2639	99.4469	87.8858	2697	20	2697	15	13	86.6667
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5462	99.5186	99.5739	79.3195	10749	52	10749	46	13	28.2609
bgallagher-sentieon	SNP	tv	map_l250_m2_e0	*	98.1510	98.5427	97.7625	89.3375	2840	42	2840	65	13	20.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	*	98.1725	98.5597	97.7884	89.4056	2874	42	2874	65	13	20.0000
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	62.8983	80.9524	51.4286	99.9273	17	4	18	17	13	76.4706
anovak-vg	INDEL	D16_PLUS	map_siren	het	65.2174	57.6923	75.0000	77.5439	45	33	48	16	13	81.2500
anovak-vg	INDEL	D1_5	map_l125_m2_e0	homalt	87.6855	81.0440	95.5128	86.5285	295	69	298	14	13	92.8571
anovak-vg	INDEL	D1_5	map_l125_m2_e1	homalt	87.8083	81.1828	95.6113	86.4773	302	70	305	14	13	92.8571
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.9134	97.0765	98.7647	80.5287	8866	267	8875	111	13	11.7117
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.9134	97.0765	98.7647	80.5287	8866	267	8875	111	13	11.7117
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5214	99.5507	99.4922	74.9449	5096	23	5094	26	13	50.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3374	11292	4	11292	14	13	92.8571
bgallagher-sentieon	INDEL	*	map_siren	homalt	99.3618	99.5480	99.1763	81.3504	2643	12	2649	22	13	59.0909
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1232	93.1973	99.2389	33.3853	1507	110	1695	13	13	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1036	93.1474	99.2537	35.9088	1536	113	1729	13	13	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.9954	97.2403	98.7624	61.1289	1198	34	1197	15	13	86.6667
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2511	98.5968	99.9141	62.3697	34922	497	34912	30	13	43.3333
astatham-gatk	SNP	*	map_l150_m1_e0	homalt	99.3312	98.8113	99.8566	68.4753	11139	134	11139	16	13	81.2500

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