PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16901-16950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | func_cds | het | 99.3512 | 99.0945 | 99.6092 | 31.0131 | 8427 | 77 | 8411 | 33 | 13 | 39.3939 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.9167 | 97.2077 | 87.1719 | 66.1173 | 3899 | 112 | 3853 | 567 | 13 | 2.2928 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | homalt | 96.4550 | 93.7342 | 99.3385 | 76.5596 | 2588 | 173 | 2553 | 17 | 13 | 76.4706 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7435 | 93.5247 | 98.0701 | 82.9494 | 1401 | 97 | 1372 | 27 | 13 | 48.1481 | |
| gduggal-snapvard | SNP | tv | map_siren | homalt | 98.2279 | 96.6415 | 99.8673 | 55.2791 | 16661 | 579 | 16552 | 22 | 13 | 59.0909 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.1765 | 66.1765 | 66.1765 | 97.5801 | 45 | 23 | 45 | 23 | 13 | 56.5217 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 17.0622 | 9.6110 | 75.9259 | 78.6561 | 42 | 395 | 41 | 13 | 13 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.6664 | 37.9233 | 91.7582 | 47.7011 | 168 | 275 | 167 | 15 | 13 | 86.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | * | 96.2111 | 96.1880 | 96.2343 | 84.4528 | 1842 | 73 | 1840 | 72 | 13 | 18.0556 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.5961 | 80.0752 | 94.2731 | 78.2359 | 213 | 53 | 214 | 13 | 13 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.6667 | 66.6667 | 52.3810 | 73.7500 | 56 | 28 | 33 | 30 | 13 | 43.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | * | 95.9035 | 96.4152 | 95.3972 | 84.7728 | 1291 | 48 | 1285 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | * | 95.9918 | 96.4912 | 95.4975 | 85.9790 | 1320 | 48 | 1315 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | * | 95.9578 | 96.3441 | 95.5746 | 86.0998 | 1344 | 51 | 1339 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | homalt | 98.0751 | 98.6799 | 97.4776 | 83.6569 | 1196 | 16 | 1198 | 31 | 13 | 41.9355 | |
| gduggal-snapplat | SNP | * | segdup | homalt | 99.4486 | 99.0692 | 99.8310 | 88.7280 | 10643 | 100 | 10636 | 18 | 13 | 72.2222 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 31.5789 | 81.2500 | 0 | 0 | 36 | 78 | 13 | 16.6667 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 30.2752 | 80.5357 | 0 | 0 | 33 | 76 | 13 | 17.1053 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 80.8625 | 80.6452 | 81.0811 | 77.1605 | 50 | 12 | 60 | 14 | 13 | 92.8571 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | * | 85.8304 | 80.5714 | 91.8239 | 87.1255 | 141 | 34 | 146 | 13 | 13 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 38.9269 | 92.7273 | 24.6341 | 91.7522 | 102 | 8 | 101 | 309 | 13 | 4.2071 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.6454 | 99.5085 | 72.1445 | 74.1800 | 1822 | 9 | 1857 | 717 | 13 | 1.8131 | |
| gduggal-snapfb | SNP | ti | segdup | het | 98.8224 | 99.3766 | 98.2744 | 91.5559 | 11955 | 75 | 11960 | 210 | 13 | 6.1905 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 13.3646 | 83.0645 | 7.2669 | 75.3956 | 103 | 21 | 113 | 1442 | 13 | 0.9015 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | * | 79.7334 | 72.3356 | 88.8166 | 94.7534 | 638 | 244 | 683 | 86 | 13 | 15.1163 | |
| gduggal-snapplat | INDEL | * | segdup | het | 76.3682 | 71.8281 | 81.5210 | 97.0363 | 1053 | 413 | 1147 | 260 | 13 | 5.0000 | |
| gduggal-snapplat | INDEL | * | segdup | homalt | 82.9294 | 75.2083 | 92.4171 | 94.6528 | 722 | 238 | 780 | 64 | 13 | 20.3125 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6705 | 99.6705 | 99.6705 | 66.2895 | 4840 | 16 | 4840 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6119 | 99.7409 | 99.4832 | 68.3306 | 3080 | 8 | 3080 | 16 | 13 | 81.2500 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3348 | 99.0173 | 99.6544 | 63.3928 | 27406 | 272 | 27397 | 95 | 13 | 13.6842 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | * | 98.0229 | 97.5795 | 98.4704 | 98.6389 | 2056 | 51 | 2060 | 32 | 13 | 40.6250 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | * | 98.0800 | 97.6321 | 98.5321 | 98.7156 | 2144 | 52 | 2148 | 32 | 13 | 40.6250 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6891 | 96.9760 | 98.4127 | 66.3940 | 930 | 29 | 930 | 15 | 13 | 86.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002complexvar | het | 99.3867 | 98.9004 | 99.8777 | 56.7573 | 17989 | 200 | 17970 | 22 | 13 | 59.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 93.9024 | 85.5556 | 75.6098 | 77 | 5 | 77 | 13 | 13 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3707 | 95.9702 | 98.8127 | 71.1458 | 1548 | 65 | 1498 | 18 | 13 | 72.2222 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9951 | 96.7873 | 99.2334 | 74.5777 | 2380 | 79 | 2330 | 18 | 13 | 72.2222 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.3660 | 81.6425 | 96.2963 | 68.1777 | 338 | 76 | 338 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7283 | 98.2659 | 95.2381 | 69.3299 | 340 | 6 | 340 | 17 | 13 | 76.4706 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0325 | 97.2835 | 98.7931 | 73.7259 | 1146 | 32 | 1146 | 14 | 13 | 92.8571 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2751 | 99.6037 | 98.9488 | 87.5654 | 1508 | 6 | 1506 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m0_e0 | * | 97.8365 | 97.3723 | 98.3051 | 92.1397 | 1334 | 36 | 1334 | 23 | 13 | 56.5217 | |