PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 333 334 335 336 337 338 339 340 341 ... 1720 1721 » 16801-16850 / 86044 show all
gduggal-bwavard	INDEL	I1_5	map_l150_m2_e0	het	93.4675	98.3819	89.0208	93.4867	304	5	300	37	13	35.1351
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.1182	98.6758	99.5645	45.6045	6185	83	6173	27	13	48.1481
gduggal-bwavard	SNP	ti	map_l100_m1_e0	homalt	98.5262	97.1882	99.9016	59.9578	17455	505	17256	17	13	76.4706
gduggal-bwavard	SNP	ti	segdup	het	98.3107	97.6060	99.0256	94.1945	11742	288	11687	115	13	11.3043
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	97.5197	96.9598	98.0861	47.0350	2073	65	2050	40	13	32.5000
gduggal-bwavard	SNP	tv	map_l250_m2_e0	het	85.1643	97.8866	75.3687	92.7134	1899	41	1891	618	13	2.1036
gduggal-bwavard	SNP	tv	map_l250_m2_e1	het	85.2663	97.9135	75.5126	92.7832	1924	41	1915	621	13	2.0934
gduggal-snapfb	INDEL	*	map_l100_m0_e0	het	92.0855	91.5769	92.5998	82.0643	935	86	951	76	13	17.1053
gduggal-snapfb	INDEL	*	map_l100_m2_e1	homalt	96.5853	94.9258	98.3037	87.2974	1216	65	1217	21	13	61.9048
mlin-fermikit	INDEL	D1_5	segdup	het	97.3152	96.9653	97.6676	91.5120	671	21	670	16	13	81.2500
mlin-fermikit	INDEL	D6_15	HG002compoundhet	hetalt	78.2401	64.3602	99.7528	23.4532	5246	2905	5245	13	13	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	77.7879	63.7655	99.7160	28.7405	4535	2577	4564	13	13	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.6790	63.6186	99.7178	29.4964	4564	2610	4593	13	13	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	50.9091	51.8519	50.0000	88.3929	14	13	13	13	13	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	83.8710	95.1220	75.0000	87.3786	39	2	39	13	13	100.0000
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.8956	97.3822	98.4144	74.9934	930	25	931	15	13	86.6667
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	91.2698	88.4298	94.2982	65.0842	214	28	215	13	13	100.0000
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	87.3343	83.8710	91.0959	81.8408	130	25	133	13	13	100.0000
mlin-fermikit	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1226	96.8012	99.4807	58.3241	34286	1133	34292	179	13	7.2626
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	88.2477	83.3900	93.7063	86.7826	1471	293	1474	99	13	13.1313
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.2635	100.0000	96.5863	56.1233	481	0	481	17	13	76.4706
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4163	99.3280	99.5048	58.5822	3252	22	3215	16	13	81.2500
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	90.0602	82.8959	98.5801	34.3105	979	202	972	14	13	92.8571
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.1830	82.6962	96.7742	67.5635	411	86	420	14	13	92.8571
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.7010	93.8654	97.6098	62.3325	1729	113	1756	43	13	30.2326
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.8029	98.7545	98.8513	71.4513	6026	76	6024	70	13	18.5714
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.3982	97.2756	99.5471	54.5040	3035	85	3077	14	13	92.8571
ltrigg-rtg2	SNP	*	HG002compoundhet	het	99.2921	98.9773	99.6090	42.0270	14033	145	14011	55	13	23.6364
ltrigg-rtg2	SNP	ti	HG002compoundhet	*	99.3879	98.9873	99.7918	33.3089	17301	177	17255	36	13	36.1111
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	70.4000	64.7059	77.1930	96.8784	44	24	44	13	13	100.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	67.4157	65.2174	69.7674	63.8655	30	16	30	13	13	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.1544	99.6124	94.8148	60.2941	257	1	256	14	13	92.8571
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	77.3563	63.1748	99.7477	25.6850	5114	2981	5140	13	13	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.4004	63.2326	99.7503	28.0442	5168	3005	5193	13	13	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	82.8097	70.7958	99.7345	26.8052	4875	2011	4883	13	13	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.2767	87.0680	98.1481	43.3170	781	116	795	15	13	86.6667
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	96.6651	96.2419	97.0920	67.8312	1639	64	1636	49	13	26.5306
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571
ndellapenna-hhga	SNP	*	map_l125_m2_e0	homalt	99.7405	99.5626	99.9191	67.9668	17299	76	17299	14	13	92.8571
ndellapenna-hhga	SNP	*	map_l125_m2_e1	homalt	99.7429	99.5665	99.9199	68.0072	17456	76	17456	14	13	92.8571
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.7880	96.3753	97.2043	81.1588	452	17	452	13	13	100.0000
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.8068	96.9376	98.6918	81.5857	2564	81	2565	34	13	38.2353
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4376	99.3474	99.5280	38.8679	2740	18	2741	13	13	100.0000
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	het	98.6590	97.7984	99.5349	67.9349	7063	159	7063	33	13	39.3939
ndellapenna-hhga	SNP	tv	map_l125_m0_e0	*	98.6916	97.8284	99.5702	72.2163	6487	144	6487	28	13	46.4286
ndellapenna-hhga	SNP	tv	map_l150_m1_e0	het	98.5385	97.5525	99.5446	72.4747	6776	170	6776	31	13	41.9355
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	het	98.5727	97.6145	99.5500	73.8403	7079	173	7079	32	13	40.6250

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge