PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16751-16800 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | * | 91.1702 | 96.9317 | 86.0553 | 90.3175 | 695 | 22 | 685 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | het | 89.6534 | 98.6590 | 82.1543 | 92.0895 | 515 | 7 | 511 | 111 | 13 | 11.7117 | |
| eyeh-varpipe | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 83.6538 | 94.4474 | 0 | 0 | 87 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 86.0000 | 87.6847 | 0 | 0 | 86 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8520 | 0 | 0 | 64 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 53.1250 | 95.4416 | 0 | 0 | 17 | 15 | 13 | 86.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | * | 97.7557 | 97.9434 | 97.5687 | 88.8732 | 762 | 16 | 923 | 23 | 13 | 56.5217 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9902 | 92.8571 | 91.1392 | 82.1469 | 117 | 9 | 144 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8595 | 92.3664 | 91.3580 | 82.6367 | 121 | 10 | 148 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | het | 91.2869 | 91.1111 | 91.4634 | 82.8452 | 123 | 12 | 150 | 14 | 13 | 92.8571 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3169 | 89.7764 | 99.3411 | 33.3446 | 6182 | 704 | 1960 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3155 | 95.0867 | 93.5567 | 70.3591 | 329 | 17 | 363 | 25 | 13 | 52.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.2401 | 97.2678 | 97.2125 | 76.6096 | 534 | 15 | 558 | 16 | 13 | 81.2500 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.4374 | 75.3086 | 86.3158 | 64.6840 | 61 | 20 | 82 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | homalt | 99.4923 | 99.1127 | 99.8748 | 68.0895 | 16755 | 150 | 16755 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | homalt | 99.4945 | 99.1137 | 99.8782 | 70.3251 | 17221 | 154 | 17221 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | homalt | 99.4990 | 99.1216 | 99.8793 | 70.3837 | 17378 | 154 | 17378 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | het | 96.5356 | 96.2151 | 96.8583 | 93.6158 | 1449 | 57 | 1449 | 47 | 13 | 27.6596 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.7638 | 98.6660 | 89.3256 | 80.9138 | 1997 | 27 | 2000 | 239 | 13 | 5.4393 | |
| eyeh-varpipe | SNP | ti | HG002complexvar | hetalt | 99.6433 | 99.5169 | 99.7701 | 22.0458 | 206 | 1 | 6075 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 59.9965 | 83.1683 | 46.9231 | 93.4110 | 84 | 17 | 61 | 69 | 13 | 18.8406 | |
| eyeh-varpipe | SNP | ti | segdup | * | 98.6842 | 99.8874 | 97.5096 | 89.9888 | 19515 | 22 | 19225 | 491 | 13 | 2.6477 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | het | 96.7521 | 99.7334 | 93.9440 | 75.6347 | 10099 | 27 | 9990 | 644 | 13 | 2.0186 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | het | 96.7900 | 99.7414 | 94.0082 | 76.9260 | 10415 | 27 | 10308 | 657 | 13 | 1.9787 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | het | 96.8040 | 99.7441 | 94.0321 | 77.0079 | 10526 | 27 | 10415 | 661 | 13 | 1.9667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 91.1195 | 84.5528 | 98.7921 | 74.4432 | 1144 | 209 | 1145 | 14 | 13 | 92.8571 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | homalt | 98.4321 | 98.0484 | 98.8189 | 84.9917 | 1256 | 25 | 1255 | 15 | 13 | 86.6667 | |
| gduggal-bwaplat | INDEL | I16_PLUS | * | het | 55.5939 | 38.8521 | 97.6895 | 77.4865 | 1056 | 1662 | 1057 | 25 | 13 | 52.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.0631 | 58.4648 | 97.3776 | 92.1719 | 556 | 395 | 557 | 15 | 13 | 86.6667 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 82.0159 | 72.4008 | 94.5759 | 92.8167 | 1915 | 730 | 1918 | 110 | 13 | 11.8182 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.6186 | 84.8043 | 99.6235 | 66.5948 | 9253 | 1658 | 9262 | 35 | 13 | 37.1429 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.6939 | 85.0833 | 99.4182 | 67.5827 | 5972 | 1047 | 5981 | 35 | 13 | 37.1429 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | * | 73.1779 | 57.8921 | 99.4316 | 88.1943 | 9272 | 6744 | 9272 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | het | 78.1031 | 64.4085 | 99.1939 | 89.8771 | 6522 | 3604 | 6522 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | * | 73.9169 | 58.8210 | 99.4361 | 88.9350 | 9699 | 6790 | 9699 | 55 | 13 | 23.6364 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | het | 78.7735 | 65.3227 | 99.2001 | 90.4805 | 6821 | 3621 | 6821 | 55 | 13 | 23.6364 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | * | 74.1036 | 59.0623 | 99.4240 | 88.9166 | 9838 | 6819 | 9838 | 57 | 13 | 22.8070 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | het | 78.9711 | 65.6022 | 99.1834 | 90.4624 | 6923 | 3630 | 6923 | 57 | 13 | 22.8070 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | homalt | 99.5892 | 99.2954 | 99.8846 | 63.9034 | 18180 | 129 | 18180 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | homalt | 99.5933 | 99.3025 | 99.8858 | 63.9101 | 18365 | 129 | 18365 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6826 | 98.0211 | 91.5640 | 77.5938 | 1486 | 30 | 1487 | 137 | 13 | 9.4891 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.0355 | 72.4420 | 97.2578 | 73.4079 | 531 | 202 | 532 | 15 | 13 | 86.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3152 | 73.5419 | 98.7866 | 76.1775 | 1387 | 499 | 1384 | 17 | 13 | 76.4706 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 81.6123 | 69.5280 | 98.7810 | 81.8253 | 2519 | 1104 | 2512 | 31 | 13 | 41.9355 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.5452 | 70.6189 | 99.3183 | 55.6924 | 1894 | 788 | 1894 | 13 | 13 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.3828 | 89.4773 | 99.8574 | 56.4904 | 9107 | 1071 | 9104 | 13 | 13 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | het | 93.2578 | 98.3278 | 88.6850 | 92.8163 | 294 | 5 | 290 | 37 | 13 | 35.1351 | |